Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AT694_RS08315 Genome accession   NZ_LN831036
Coordinates   1683048..1684322 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13435     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1678048..1689322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT694_RS08285 (ERS445051_01572) mnmA 1678250..1679368 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  AT694_RS08290 (ERS445051_01573) - 1679369..1680511 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  AT694_RS08295 (ERS445051_01574) - 1680823..1681836 (+) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  AT694_RS08300 (ERS445051_01575) - 1682073..1682219 (-) 147 WP_000009238.1 SAS049 family protein -
  AT694_RS08305 (ERS445051_01576) - 1682259..1682441 (-) 183 WP_000752909.1 CsbD family protein -
  AT694_RS08310 (ERS445051_01577) cymR 1682541..1682963 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  AT694_RS08315 (ERS445051_01578) rarA 1683048..1684322 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  AT694_RS08320 (ERS445051_01579) - 1684483..1685256 (-) 774 WP_000682642.1 ThiF family adenylyltransferase -
  AT694_RS08325 - 1685256..1685384 (-) 129 WP_031864484.1 hypothetical protein -
  AT694_RS08335 (ERS445051_01581) aspS 1685717..1687483 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  AT694_RS08340 (ERS445051_01582) hisS 1687499..1688761 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=991691 AT694_RS08315 WP_000102738.1 1683048..1684322(+) (rarA) [Staphylococcus aureus strain NCTC13435]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=991691 AT694_RS08315 WP_000102738.1 1683048..1684322(+) (rarA) [Staphylococcus aureus strain NCTC13435]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCTTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686