Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SRS_RS08675 Genome accession   NZ_LN626917
Coordinates   1715158..1716432 (+) Length   424 a.a.
NCBI ID   WP_045179219.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710158..1721432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS08645 mnmA 1710362..1711480 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  SRS_RS08650 - 1711481..1712623 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  SRS_RS08655 - 1712933..1713946 (+) 1014 WP_000985898.1 LLM class flavin-dependent oxidoreductase -
  SRS_RS08660 - 1714183..1714329 (-) 147 WP_000008061.1 SAS049 family protein -
  SRS_RS08665 - 1714369..1714551 (-) 183 WP_000752909.1 CsbD family protein -
  SRS_RS08670 cymR 1714651..1715073 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  SRS_RS08675 rarA 1715158..1716432 (+) 1275 WP_045179219.1 replication-associated recombination protein A Machinery gene
  SRS_RS08680 - 1716593..1717366 (-) 774 WP_000682640.1 tRNA threonylcarbamoyladenosine dehydratase -
  SRS_RS08685 - 1717366..1717494 (-) 129 WP_001791215.1 hypothetical protein -
  SRS_RS08690 aspS 1717827..1719593 (-) 1767 WP_045179222.1 aspartate--tRNA ligase -
  SRS_RS08695 hisS 1719609..1720871 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47277.92 Da        Isoelectric Point: 8.6816

>NTDB_id=990979 SRS_RS08675 WP_045179219.1 1715158..1716432(+) (rarA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLLKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSERQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=990979 SRS_RS08675 WP_045179219.1 1715158..1716432(+) (rarA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
GTGAGTACAGAACCATTAGCGTCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACACTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGCTTACTAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATTTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACGACAACTCAAAGAAATATATAACAATTTACTTAAACAAAGGCCATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684