Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SRS_RS05705 Genome accession   NZ_LN626917
Coordinates   1176248..1177021 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171248..1182021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS05670 - 1171501..1172271 (-) 771 WP_000473699.1 isoprenyl transferase -
  SRS_RS05675 frr 1172644..1173198 (-) 555 WP_001280006.1 ribosome recycling factor -
  SRS_RS05680 pyrH 1173217..1173939 (-) 723 WP_000057330.1 UMP kinase -
  SRS_RS05685 tsf 1174076..1174957 (-) 882 WP_000201387.1 translation elongation factor Ts -
  SRS_RS05690 - 1174992..1175105 (-) 114 WP_001791405.1 hypothetical protein -
  SRS_RS05695 rpsB 1175139..1175906 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  SRS_RS05700 - 1176105..1176197 (-) 93 WP_031788481.1 hypothetical protein -
  SRS_RS05705 codY 1176248..1177021 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SRS_RS05710 hslU 1177046..1178449 (-) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  SRS_RS05715 hslV 1178515..1179060 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SRS_RS05720 xerC 1179057..1179953 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  SRS_RS05725 trmFO 1180371..1181678 (-) 1308 WP_045178813.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=990953 SRS_RS05705 WP_000055337.1 1176248..1177021(-) (codY) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=990953 SRS_RS05705 WP_000055337.1 1176248..1177021(-) (codY) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428