Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HMPREF9318_RS09145 Genome accession   NZ_KB373319
Coordinates   252971..254242 (-) Length   423 a.a.
NCBI ID   WP_006739604.1    Uniprot ID   G5KDT6
Organism   Streptococcus urinalis FB127-CNA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247971..259242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS09110 (HMPREF9318_01825) - 248490..248785 (+) 296 Protein_259 cell wall anchor protein -
  HMPREF9318_RS09115 (HMPREF9318_01826) - 248901..249352 (+) 452 WP_006740737.1 LPXTG cell wall anchor domain-containing protein -
  HMPREF9318_RS09120 (HMPREF9318_01827) - 249575..250117 (+) 543 WP_006740738.1 hypothetical protein -
  HMPREF9318_RS09125 (HMPREF9318_01828) - 250193..250825 (+) 633 WP_006739429.1 hypothetical protein -
  HMPREF9318_RS09130 (HMPREF9318_01829) - 251018..251344 (+) 327 WP_001188031.1 DUF771 domain-containing protein -
  HMPREF9318_RS09135 (HMPREF9318_01830) - 251394..252515 (+) 1122 WP_006738744.1 site-specific integrase -
  HMPREF9318_RS09145 (HMPREF9318_01831) rarA 252971..254242 (-) 1272 WP_006739604.1 replication-associated recombination protein A Machinery gene
  HMPREF9318_RS09150 (HMPREF9318_01832) - 254254..254832 (-) 579 WP_006740218.1 anthranilate synthase component II -
  HMPREF9318_RS09155 (HMPREF9318_01833) pabB 254851..256572 (-) 1722 WP_006740217.1 aminodeoxychorismate synthase component I -
  HMPREF9318_RS09160 (HMPREF9318_01834) - 256691..257161 (+) 471 WP_006738527.1 DUF3013 family protein -
  HMPREF9318_RS09165 (HMPREF9318_01835) prmA 257275..258228 (+) 954 WP_006739386.1 50S ribosomal protein L11 methyltransferase -
  HMPREF9318_RS09170 (HMPREF9318_01836) - 258228..258977 (+) 750 WP_006739881.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46621.84 Da        Isoelectric Point: 6.0209

>NTDB_id=990743 HMPREF9318_RS09145 WP_006739604.1 252971..254242(-) (rarA) [Streptococcus urinalis FB127-CNA-2]
MPDNLALRMRPLTINEVIGQQHLVGDGKIIARMVEANKLSSMILFGPPGIGKTSIASAIAGTTKYAFRTFNATVDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLTSDDIANALK
NALDDKERGFDFSVHLDDDALSFITTATNGDLRSAYNSLDLAVMSTKPQADGSRHISLETVENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQVHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYLAMDQALSDLRSNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHNYPEKWVKQDYLPEKLKGKNYFSP
NETGKYERALGANKERIDRLSQE

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=990743 HMPREF9318_RS09145 WP_006739604.1 252971..254242(-) (rarA) [Streptococcus urinalis FB127-CNA-2]
ATGCCTGATAATTTAGCATTACGCATGAGACCGCTAACGATTAACGAGGTTATCGGTCAACAACATCTCGTTGGTGACGG
TAAAATTATTGCCCGTATGGTTGAGGCAAATAAACTATCATCTATGATACTATTTGGCCCTCCTGGCATTGGAAAAACAT
CTATAGCTAGTGCTATTGCCGGTACAACAAAATATGCCTTTAGAACTTTTAATGCCACTGTAGATACTAAAAAAAGGTTA
CAAGAAATTGCTGAAGAGGCTAAGTTTTCAGGTGGTTTAGTGCTTTTACTAGATGAAATTCATCGCCTAGATAAGACTAA
GCAAGATTTTTTATTGCCACTTCTTGAAAATGGGAATATTATCATGATTGGTGCCACCACAGAGAACCCTTTTTTCTCTG
TCACTCCAGCCATTAGGAGTCGTGTCCAAATTTTTGAACTAGAGCCACTGACAAGTGATGACATCGCAAATGCTTTAAAA
AATGCACTAGATGATAAGGAACGCGGTTTTGATTTTTCTGTTCACCTTGATGATGATGCTTTGTCATTTATTACAACAGC
TACAAATGGTGACCTTCGCTCTGCTTATAATTCACTTGATTTAGCGGTCATGTCCACAAAACCACAAGCAGATGGTAGTA
GACACATTAGTTTGGAAACCGTTGAAAACTCCTTACAACGTTCCTATATCACTATGGATAAAAATGGTGATGGCCATTAT
GATGTTCTTTCTGCCTTACAAAAGTCAATCCGCGGTTCCGATGTTAATGCGAGTTTACATTATGCCGCTCGATTAATTGA
AGCAGGTGACTTACCAAGCTTGGCTAGACGTTTAACGGTTATCGCCTATGAAGATATTGGACTGGCAAATCCTGAAGCAC
AAGTGCATACAGTAACTGCACTTGAAGCTGCTCAAAAAATAGGATTTCCCGAAGCACGCATTTTGATTGCAAATGTCGTT
GTCGATTTGGCTTTGTCTCCAAAATCAAATTCAGCTTACCTTGCAATGGACCAGGCATTAAGTGATTTAAGGTCAAATGG
CAATCTGCCTATTCCACGTCATTTAAGAGATGGCCATTATGCAGGCAGTAAAGAATTAGGCAATGCACAAGACTATCTTT
ATCCTCACAATTACCCTGAAAAATGGGTAAAACAAGATTATTTACCAGAAAAATTAAAAGGAAAAAATTATTTTTCACCA
AATGAAACAGGTAAATATGAGCGTGCTTTAGGAGCTAACAAAGAGCGAATTGACAGGCTATCACAGGAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KDT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.432

98.582

0.596