Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACNRMP_RS06575 Genome accession   NZ_JBLWDC010000001
Coordinates   1445627..1446067 (-) Length   146 a.a.
NCBI ID   WP_028853590.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain PD 7123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440627..1451067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNRMP_RS06555 (ACNRMP_06555) - 1442983..1443519 (-) 537 WP_011002586.1 pilus assembly PilX family protein -
  ACNRMP_RS06560 (ACNRMP_06560) - 1443523..1444551 (-) 1029 WP_028853589.1 PilW family protein -
  ACNRMP_RS06565 (ACNRMP_06565) pilV 1444548..1445138 (-) 591 WP_011002588.1 type IV pilus modification protein PilV -
  ACNRMP_RS06570 (ACNRMP_06570) - 1445135..1445623 (-) 489 WP_016723684.1 GspH/FimT family pseudopilin -
  ACNRMP_RS06575 (ACNRMP_06575) pilE 1445627..1446067 (-) 441 WP_028853590.1 type IV pilin protein Machinery gene
  ACNRMP_RS06580 (ACNRMP_06580) pilU 1446262..1447401 (-) 1140 WP_011002591.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACNRMP_RS06585 (ACNRMP_06585) pilT 1447454..1448497 (-) 1044 WP_011002592.1 type IV pilus twitching motility protein PilT Machinery gene
  ACNRMP_RS06590 (ACNRMP_06590) - 1448622..1449344 (+) 723 WP_011002593.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACNRMP_RS06595 (ACNRMP_06595) proC 1449379..1450203 (+) 825 WP_028853591.1 pyrroline-5-carboxylate reductase -
  ACNRMP_RS06600 (ACNRMP_06600) - 1450225..1450503 (+) 279 WP_028853592.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15229.30 Da        Isoelectric Point: 9.0659

>NTDB_id=990689 ACNRMP_RS06575 WP_028853590.1 1445627..1446067(-) (pilE) [Ralstonia pseudosolanacearum strain PD 7123]
MASKLACQRARSARGFTLIELMIVAAIVAILAVLAYPSYVQYVVRSNRAAAESFMQEVAAAQERFLLDNRAYAPDLATLQ
YASSVPASVASKYQFSFTAVTTAPPAYTLNATPTGSQASSDAACGTLGLSNTGSKTASGGASNCWK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=990689 ACNRMP_RS06575 WP_028853590.1 1445627..1446067(-) (pilE) [Ralstonia pseudosolanacearum strain PD 7123]
GTGGCAAGCAAGCTTGCATGCCAGCGCGCGCGGTCAGCGCGGGGCTTCACGCTGATCGAGCTCATGATCGTGGCGGCGAT
TGTCGCCATTCTCGCGGTTCTGGCGTATCCCTCTTACGTTCAGTACGTCGTCCGCTCCAACCGGGCGGCGGCGGAATCGT
TCATGCAGGAAGTGGCTGCGGCCCAAGAGCGCTTCCTGCTCGATAACCGGGCCTATGCCCCGGACCTGGCGACGCTGCAA
TATGCCAGCAGTGTTCCGGCCAGCGTCGCCTCCAAGTACCAGTTCAGCTTCACTGCCGTCACGACGGCTCCGCCGGCGTA
TACGCTGAATGCAACGCCGACGGGCAGCCAGGCCTCCAGCGACGCCGCGTGCGGCACGCTCGGCCTGTCGAACACCGGCA
GCAAGACGGCCTCCGGCGGTGCCTCCAACTGCTGGAAATAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

39.552

91.781

0.363
  comF Acinetobacter baylyi ADP1

39.259

92.466

0.363