Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5312_RS01335 Genome accession   NZ_JAGFUR010000001
Coordinates   277803..279080 (-) Length   425 a.a.
NCBI ID   WP_064970435.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190502E1-H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272803..284080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5312_RS01310 (J5312_01310) - 273305..275053 (+) 1749 WP_214193966.1 TrkH family potassium uptake protein -
  J5312_RS01315 (J5312_01315) - 275060..275752 (+) 693 WP_064970438.1 TrkA family potassium uptake protein -
  J5312_RS01320 (J5312_01320) - 275756..276376 (+) 621 WP_038693277.1 CoA pyrophosphatase -
  J5312_RS01325 (J5312_01325) - 276405..277211 (+) 807 WP_064970437.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  J5312_RS01330 (J5312_01330) - 277195..277806 (+) 612 WP_064970436.1 L-threonylcarbamoyladenylate synthase -
  J5312_RS01335 (J5312_01335) rarA 277803..279080 (-) 1278 WP_064970435.1 replication-associated recombination protein A Machinery gene
  J5312_RS01340 (J5312_01340) - 279198..280076 (+) 879 WP_127919813.1 IS982-like element ISRa1 family transposase -
  J5312_RS01345 (J5312_01345) yidD 280148..280402 (+) 255 WP_064969823.1 membrane protein insertion efficiency factor YidD -
  J5312_RS01350 (J5312_01350) lgt 280410..281261 (+) 852 WP_064970434.1 prolipoprotein diacylglyceryl transferase -
  J5312_RS01355 (J5312_01355) prfB 281422..282534 (+) 1113 WP_064970451.1 peptide chain release factor 2 -
  J5312_RS01360 (J5312_01360) - 282612..283289 (+) 678 WP_004917711.1 DedA family protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47506.20 Da        Isoelectric Point: 6.5101

>NTDB_id=990190 J5312_RS01335 WP_064970435.1 277803..279080(-) (rarA) [Riemerella anatipestifer strain 20190502E1-H1]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVPQEFLPEELSGVS
FYCSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=990190 J5312_RS01335 WP_064970435.1 277803..279080(-) (rarA) [Riemerella anatipestifer strain 20190502E1-H1]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGCTTTGAGGTGGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAACTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGTGAG
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGTGATGTTAATGCCGCTTTGTACTGGCTAGGGAG
AATGCTCGTGGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACAATGGCTAACAGTTGTTTTCAATCAGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCTTCACCTAAGAGTAATTCGGCGTATCAAGCCATTAATGAGGCAATGGCAATGGC
GAAAAAAACAGCTCATTTGCCCGTGCCATTGCACTTAAGAAATGCTCCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATTGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAATGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.148

95.529

0.384