Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GBSCOH1_RS09190 Genome accession   NZ_HG939456
Coordinates   1845634..1846902 (+) Length   422 a.a.
NCBI ID   WP_000774767.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840634..1851902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS09155 (GBSCOH1_1767) prmA 1841030..1841983 (-) 954 WP_001099291.1 50S ribosomal protein L11 methyltransferase -
  GBSCOH1_RS09160 (GBSCOH1_1768) - 1841980..1842444 (-) 465 WP_306425658.1 MepB family protein -
  GBSCOH1_RS09165 (GBSCOH1_1769) - 1842562..1843278 (+) 717 WP_000859577.1 MerR family transcriptional regulator -
  GBSCOH1_RS09170 (GBSCOH1_1770) - 1843317..1843787 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  GBSCOH1_RS09175 (GBSCOH1_1771) - 1843759..1844217 (-) 459 WP_000350741.1 NUDIX hydrolase -
  GBSCOH1_RS11425 - 1844204..1844347 (-) 144 Protein_1743 RNA-binding protein -
  GBSCOH1_RS09180 (GBSCOH1_1773) - 1844353..1844823 (-) 471 WP_001051344.1 DUF3013 family protein -
  GBSCOH1_RS09185 (GBSCOH1_1774) - 1845150..1845641 (+) 492 WP_001869680.1 GNAT family N-acetyltransferase -
  GBSCOH1_RS09190 (GBSCOH1_1775) rarA 1845634..1846902 (+) 1269 WP_000774767.1 replication-associated recombination protein A Machinery gene
  GBSCOH1_RS09200 (GBSCOH1_1777) - 1847357..1848478 (-) 1122 WP_000257255.1 site-specific integrase -
  GBSCOH1_RS09205 (GBSCOH1_1778) - 1848528..1848854 (-) 327 WP_001188031.1 DUF771 domain-containing protein -
  GBSCOH1_RS09210 (GBSCOH1_1779) - 1849047..1849679 (-) 633 WP_000578743.1 hypothetical protein -
  GBSCOH1_RS09215 (GBSCOH1_1780) - 1849760..1850551 (-) 792 WP_000048871.1 LPXTG cell wall anchor domain-containing protein -
  GBSCOH1_RS09220 (GBSCOH1_1781) - 1850568..1851116 (-) 549 WP_000829082.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46539.95 Da        Isoelectric Point: 6.6716

>NTDB_id=989905 GBSCOH1_RS09190 WP_000774767.1 1845634..1846902(+) (rarA) [Streptococcus agalactiae COH1]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDGALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=989905 GBSCOH1_RS09190 WP_000774767.1 1845634..1846902(+) (rarA) [Streptococcus agalactiae COH1]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTCATTGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGCTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGGGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAACGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAACGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGTGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59