Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GBSCOH1_RS01830 Genome accession   NZ_HG939456
Coordinates   323983..326373 (+) Length   796 a.a.
NCBI ID   WP_000101518.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 318983..331373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS01800 (GBSCOH1_0290) - 319608..320348 (+) 741 WP_001217940.1 ABC transporter permease -
  GBSCOH1_RS01805 (GBSCOH1_0291) - 320345..321430 (+) 1086 WP_000791335.1 sensor histidine kinase -
  GBSCOH1_RS01810 (GBSCOH1_0292) - 321432..322022 (+) 591 WP_000772044.1 DNA-binding response regulator -
  GBSCOH1_RS01815 (GBSCOH1_0293) - 322072..322776 (+) 705 WP_001168927.1 TMEM175 family protein -
  GBSCOH1_RS01820 (GBSCOH1_0294) gmk 322943..323572 (+) 630 WP_000003861.1 guanylate kinase -
  GBSCOH1_RS01825 (GBSCOH1_0295) rpoZ 323595..323909 (+) 315 WP_000979239.1 DNA-directed RNA polymerase subunit omega -
  GBSCOH1_RS01830 (GBSCOH1_0296) priA 323983..326373 (+) 2391 WP_000101518.1 primosomal protein N' Machinery gene
  GBSCOH1_RS01835 (GBSCOH1_0297) fmt 326420..327355 (+) 936 WP_000163893.1 methionyl-tRNA formyltransferase -
  GBSCOH1_RS01840 (GBSCOH1_0298) rsmB 327345..328667 (+) 1323 WP_001262601.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GBSCOH1_RS01845 (GBSCOH1_0299) - 328705..329442 (+) 738 WP_000406233.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 91050.79 Da        Isoelectric Point: 8.8865

>NTDB_id=989838 GBSCOH1_RS01830 WP_000101518.1 323983..326373(+) (priA) [Streptococcus agalactiae COH1]
MARKLAQVIVDIPLMQTDKPFSYAIPKDLEDLVQVGARVHVPFGRGNRLLQGFVVGFRDDDELETKDIAGVLDFEPVLNQ
EQLDLADQMRHTVFSYKISILKSMLPSLLNSQYDKLLLATDTLPSEDREDLFGHKTEIVFSSLSSQDAKKAGRLIQKGFI
EVQYLAKDKKTIKTEKIYKINRTLLEESQIAARAKKRLELKEFLLENPQPGRLTALNKQFSSPVVNFFREEGIIEVIEKE
ASRSDNYFKGILKTDFLDLNQEQAKVVKIVVDRIGKDQNKPFLLEGITGSGKTEVYLHVIDNVLKLGKTAIVLVPEISLT
PQMTNRFISRFGKRVAIMHSGLSDGEKFDEWRKIKSGQAKVVVGARSAIFAPLENIGAIIIDEEHESTYKQESNPRYHAR
DVALLRAEYHKAVLLMGSATPSIESRARASRDVYKFLELKHRANPKARIPQVEIIDFRNFIGQQEVSNFTPYLLDKIRDR
LDKKEQVVLMLNRRGYSSFIMCRNCGYVDQCPNCDISLTLHMATKTMNCHYCGFEKPIPRTCPNCNSKSISYYGTGTQKA
YEELLKVIPDAKILRMDVDTTRQKGGHESILKRFGNHEADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSSERT
FQLLTQVAGRAGRAEKEGEVVIQTYNPNHYAIQLAQKQDFEAFYQYEMNIRRQLGYPPYYFTVGLTLSHKDEEWLIRKSY
EVLSLLKQGFSDKVKLLGPTPKPIARTHNLYHYQIIIKYRFEDNLELVLNRLLDITQDKENRDLRLAIDHEPQNMM

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=989838 GBSCOH1_RS01830 WP_000101518.1 323983..326373(+) (priA) [Streptococcus agalactiae COH1]
ATGGCAAGAAAATTAGCACAGGTTATTGTTGATATTCCTCTGATGCAGACAGATAAACCATTTTCGTATGCCATTCCTAA
AGATTTGGAAGATTTGGTACAAGTAGGAGCACGCGTTCATGTTCCTTTTGGAAGAGGGAATCGTCTTTTGCAAGGCTTTG
TTGTCGGTTTCAGAGATGATGATGAATTAGAGACTAAGGATATTGCGGGGGTCCTAGATTTTGAACCTGTTTTAAATCAG
GAACAACTAGACTTAGCTGATCAGATGCGCCATACTGTCTTTTCTTATAAAATATCTATTTTGAAATCAATGTTACCAAG
TCTTTTGAATTCGCAATATGATAAACTCTTGTTAGCAACAGACACATTACCATCAGAAGATAGAGAAGATCTATTTGGTC
ATAAAACGGAAATTGTCTTTTCAAGTTTGTCTTCTCAAGATGCCAAAAAAGCAGGCAGATTAATTCAAAAAGGTTTCATA
GAAGTTCAATATTTAGCCAAAGATAAGAAAACAATAAAAACAGAAAAGATTTACAAAATCAACAGAACTCTGTTAGAAGA
GAGTCAAATAGCAGCAAGAGCGAAAAAGAGACTGGAGTTGAAAGAATTCCTGTTAGAAAATCCTCAACCAGGGCGCCTCA
CAGCTTTAAACAAACAATTTTCATCTCCTGTAGTTAATTTTTTCAGAGAAGAAGGAATCATTGAGGTCATTGAAAAAGAA
GCTAGTAGATCTGATAATTATTTTAAAGGAATCCTAAAAACGGATTTTTTGGATTTAAATCAGGAACAAGCTAAAGTAGT
TAAAATAGTTGTTGACCGAATTGGTAAGGATCAGAATAAACCCTTCTTGTTGGAGGGGATTACAGGGTCTGGTAAGACAG
AGGTATATCTTCATGTCATTGATAACGTTTTAAAGTTGGGAAAAACAGCGATTGTTCTCGTTCCAGAAATTTCTTTAACT
CCCCAGATGACGAATCGTTTTATTTCCCGTTTTGGAAAGCGAGTTGCTATTATGCACTCGGGCTTGTCAGATGGTGAAAA
ATTTGATGAGTGGCGAAAGATAAAATCAGGTCAAGCTAAAGTTGTCGTTGGAGCTCGTTCAGCAATTTTTGCTCCTTTGG
AAAATATCGGAGCCATCATTATAGATGAAGAACATGAATCAACTTATAAGCAAGAATCTAACCCAAGGTATCATGCGCGC
GATGTGGCCTTGCTACGTGCAGAATATCATAAAGCTGTGTTACTAATGGGATCAGCAACTCCAAGTATCGAAAGCCGAGC
TAGAGCTAGTCGGGATGTTTATAAATTTTTAGAATTAAAACATCGTGCTAATCCTAAAGCACGTATTCCTCAGGTTGAAA
TTATTGATTTTAGAAATTTTATTGGTCAACAAGAAGTTAGTAATTTCACACCATATTTACTAGATAAAATCCGAGATAGA
TTAGATAAGAAAGAGCAAGTGGTTCTTATGCTCAATCGTAGAGGTTATTCTAGTTTTATTATGTGTCGAAACTGCGGCTA
CGTTGATCAATGTCCTAATTGTGACATTTCTCTGACTTTACATATGGCTACAAAGACCATGAATTGTCATTATTGTGGGT
TTGAAAAGCCTATTCCAAGAACATGTCCAAATTGCAATAGTAAAAGTATCTCTTACTATGGTACTGGAACCCAAAAAGCT
TATGAAGAACTTTTGAAAGTTATCCCAGACGCAAAGATTTTACGGATGGATGTTGATACGACAAGGCAAAAAGGCGGTCA
TGAGTCTATTTTGAAGCGTTTCGGAAATCATGAAGCTGATATTTTATTGGGAACACAGATGATTGCTAAGGGATTGGATT
TTCCAAATGTTACTTTAGTTGGAGTACTAAATGCAGATACTTCTCTGAATTTACCTGATTTTCGATCATCAGAGCGAACT
TTTCAGCTATTAACTCAAGTGGCTGGACGTGCTGGGCGTGCTGAAAAAGAAGGAGAGGTTGTCATTCAAACTTATAATCC
TAATCATTATGCTATTCAATTAGCCCAAAAGCAAGATTTTGAAGCTTTTTATCAATATGAAATGAATATCCGTCGACAAC
TTGGTTATCCTCCTTATTATTTTACAGTTGGTTTAACATTATCGCATAAAGATGAAGAGTGGTTAATACGAAAATCTTAT
GAAGTATTAAGTTTATTGAAGCAAGGCTTTAGTGATAAAGTAAAGTTGTTAGGTCCAACGCCAAAACCAATTGCAAGAAC
ACATAACCTTTATCACTACCAAATTATTATCAAGTATCGATTTGAGGACAACCTTGAACTTGTTTTGAATCGCTTATTAG
ACATCACTCAAGACAAGGAGAATAGAGATCTTCGCTTAGCAATAGACCACGAACCGCAAAATATGATGTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(258-422)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-106)

Primosomal protein N C-terminal domain (PriA_C)

(698-792)

Helicase conserved C-terminal domain (Helicase_C)

(571-654)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(511-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

46.658

100

0.474