Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   HMPREF9425_RS01120 Genome accession   NZ_GL831112
Coordinates   207803..210307 (-) Length   834 a.a.
NCBI ID   WP_003093254.1    Uniprot ID   A0ABN2X8L2
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202803..215307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01090 (HMPREF9425_0223) - 204101..204331 (-) 231 WP_003093927.1 DNA-dependent RNA polymerase subunit epsilon -
  HMPREF9425_RS01095 (HMPREF9425_0224) tsaB 204592..205278 (+) 687 WP_037621271.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  HMPREF9425_RS01100 (HMPREF9425_0225) rimI 205238..205693 (+) 456 WP_003093417.1 ribosomal protein S18-alanine N-acetyltransferase -
  HMPREF9425_RS01105 (HMPREF9425_0226) tsaD 205693..206706 (+) 1014 WP_003094813.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  HMPREF9425_RS01110 (HMPREF9425_0227) - 206758..207450 (+) 693 WP_003096023.1 AzlC family ABC transporter permease -
  HMPREF9425_RS01115 (HMPREF9425_0228) - 207437..207763 (+) 327 WP_003093715.1 AzlD domain-containing protein -
  HMPREF9425_RS01120 (HMPREF9425_0229) recD/recD2/recDB 207803..210307 (-) 2505 WP_003093254.1 SF1B family DNA helicase RecD2 Machinery gene
  HMPREF9425_RS01125 (HMPREF9425_0230) lepB 210368..211009 (-) 642 WP_003094735.1 signal peptidase I -
  HMPREF9425_RS01130 (HMPREF9425_0231) rnhC 211028..211918 (-) 891 WP_003096026.1 ribonuclease HIII -
  HMPREF9425_RS01135 (HMPREF9425_0232) - 212230..212547 (+) 318 WP_003096030.1 hypothetical protein -
  HMPREF9425_RS01140 (HMPREF9425_0233) - 212544..213086 (+) 543 WP_003093854.1 CvpA family protein -
  HMPREF9425_RS01145 (HMPREF9425_0234) - 213177..213413 (+) 237 Protein_226 hypothetical protein -
  HMPREF9425_RS01150 (HMPREF9425_0235) - 213459..214181 (+) 723 WP_003093595.1 metal ABC transporter ATP-binding protein -
  HMPREF9425_RS01155 (HMPREF9425_0236) - 214178..215011 (+) 834 WP_003093234.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 834 a.a.        Molecular weight: 93919.37 Da        Isoelectric Point: 4.5089

>NTDB_id=989478 HMPREF9425_RS01120 WP_003093254.1 207803..210307(-) (recD/recD2/recDB) [Streptococcus vestibularis ATCC 49124]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQISNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPSLVANQLTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQSSL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRVNEL
TKLPSATIHRHLGLNSEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRKGQLPADFTEKKADRSYFEANASHILQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYSQAVDKSVEKIVKNEATDASNQTITENDIPSETLKNKDFLENIKPSQTLINTYSHPVDKSVNKAV
QTEENSRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide


Download         Length: 2505 bp        

>NTDB_id=989478 HMPREF9425_RS01120 WP_003093254.1 207803..210307(-) (recD/recD2/recDB) [Streptococcus vestibularis ATCC 49124]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTTGAAAACGCTAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGTG
AAGACTATACCTTCTGGGGTCAGCTAACCAATCATCCCAAGTATGGCGAACAACTCCAAATGACACGCTACGAACGGTCA
AAACCTTCTGCCAGCGGTCTTATCAAGTATTTTGCCAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGCGAAGATCCTATTGACAAGATTCTCGAGGATCCTAGCAAGTTAGAGCAGATTTCTAACCTTTCAA
AGGTCAATCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCTAGCTAT
GGACTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCGCTTAATCTTATTGAGGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATGGCGGATCAACTGGCTGAACGTCTCGGCATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCCGCCCTGATTCATTGTCTACTAGAAGCTAGTATGGAAGAGGGCGACACCTACATCGAAGCC
AAAGCCTTGCTTGAACGAACTATCATCCTTTTGGAAAGTGCTCGCCAAATTGAACTTGACCCCTCCTTGGTCGCTAACCA
ATTAACCAACCTCATCCAAGAGGATAAAGTGCAAAATATAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATTAGTGCAGAGGACAAAATCCAATCAAGTCTT
GAAGAGGTGGAAGAGGAGCTTGGTATTACTTATGACAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGTAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCCGACCTTCATG
GTCTAGATCTTAAAAAGTCTGATTTGCCTATTATTTTAGCGGCACCAACAGGACGGGCTGCTCGTCGGGTGAACGAACTC
ACCAAACTTCCTAGTGCCACTATTCATAGGCATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCTG
ATACTACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTGCCTTCCGTAGGTCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCTCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCAAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGATCATACTTTGAGGCTAATGCTAGCC
ATATTCTACAGATGGTCCCTAAAATTGTCTCTGCGGCTATTAAAAGTGGGATTGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGAGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTCAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCATCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATCGGAATCATCACTGACCTCATACCTGGTAAATATACTGAAAGTAAGCAGGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCTATCACACGCCAAAGTGGACGTATGCTTCAACGTAACCTCATCTACA
CCGCTATCACACGTGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATTGCAGCCTTCGATTATGCCGTTCACAACGAAGGC
GCCAAACGCAATACCTACCTCATCCAACGTTTTGAACAAACTTATTCACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGATGCCTCTAATCAAACAATAACAGAAAACGATATACCCTCAGAAACCCTTAAAAACAAAGACT
TCTTGGAAAATATCAAACCATCCCAAACTCTTATCAACACTTATTCACACCCTGTGGATAAGTCTGTTAACAAAGCTGTG
CAAACAGAAGAAAACAGTCGTTTAACTGAGGAAAATTGGGCAACTATCGACCCAATGATAGGTCTCAGCGAAGATGATAT
TGCAGCCTTTTTTAACAACAACTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

45.248

89.568

0.405