Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HMPREF9425_RS00345 Genome accession   NZ_GL831112
Coordinates   68456..69724 (+) Length   422 a.a.
NCBI ID   WP_003092076.1    Uniprot ID   A0ABP2KMK7
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63456..74724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS00320 (HMPREF9425_0066) - 65017..66663 (-) 1647 WP_003095809.1 hypothetical protein -
  HMPREF9425_RS00325 (HMPREF9425_0067) - 66876..67181 (-) 306 WP_002887079.1 DUF1292 domain-containing protein -
  HMPREF9425_RS00330 (HMPREF9425_0068) ruvX 67289..67708 (-) 420 WP_003091988.1 Holliday junction resolvase RuvX -
  HMPREF9425_RS00335 (HMPREF9425_0069) - 67708..67974 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  HMPREF9425_RS00340 (HMPREF9425_0070) rpmB 68098..68286 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  HMPREF9425_RS00345 (HMPREF9425_0071) rarA 68456..69724 (+) 1269 WP_003092076.1 replication-associated recombination protein A Machinery gene
  HMPREF9425_RS00355 (HMPREF9425_0072) - 70647..71786 (-) 1140 WP_003091984.1 tyrosine-type recombinase/integrase -
  HMPREF9425_RS00360 (HMPREF9425_0073) - 71788..71976 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  HMPREF9425_RS00365 (HMPREF9425_0075) - 71988..72964 (-) 977 Protein_71 replication initiation protein -
  HMPREF9425_RS10555 (HMPREF9425_0076) - 73010..73192 (-) 183 WP_003095815.1 hypothetical protein -
  HMPREF9425_RS00375 - 73400..73485 (+) 86 Protein_73 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46593.02 Da        Isoelectric Point: 5.6811

>NTDB_id=989464 HMPREF9425_RS00345 WP_003092076.1 68456..69724(+) (rarA) [Streptococcus vestibularis ATCC 49124]
MPDNLALRMRPRTISEVIGQKHLVGEGKIICRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGSLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGFRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=989464 HMPREF9425_RS00345 WP_003092076.1 68456..69724(+) (rarA) [Streptococcus vestibularis ATCC 49124]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATCTGGTTGGTGAAGG
TAAAATTATTTGCCGTATGGTAGAAGCAAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTA
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTAGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTACCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAAAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAATTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATTCTA
GGAGTTCTAGAGGATAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAAGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGACTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGATTTC
GTCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCATTATGCAGCACGTTTAGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCATACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTTCCAGAGGCTCGTATTTTGATAGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCAAACTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCTCATGCTTATCCTGAAAAGTGGGTTAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597