Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   HMPREF9319_RS01675 Genome accession   NZ_GL397128
Coordinates   333126..335111 (+) Length   661 a.a.
NCBI ID   WP_003063475.1    Uniprot ID   E0PBW0
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328126..340111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS01645 (HMPREF9319_0327) - 328333..329814 (+) 1482 WP_041974303.1 BglG family transcription antiterminator -
  HMPREF9319_RS01650 (HMPREF9319_0328) - 329804..330226 (+) 423 WP_003063466.1 PTS sugar transporter subunit IIA -
  HMPREF9319_RS01655 (HMPREF9319_0329) - 330241..330678 (+) 438 WP_003063468.1 PTS sugar transporter subunit IIA -
  HMPREF9319_RS01660 (HMPREF9319_0330) - 330684..330983 (+) 300 WP_003063470.1 PTS sugar transporter subunit IIB -
  HMPREF9319_RS01665 (HMPREF9319_0331) - 331011..332369 (+) 1359 WP_003063472.1 PTS ascorbate transporter subunit IIC -
  HMPREF9319_RS01670 (HMPREF9319_0332) fsa 332383..333036 (+) 654 WP_003063474.1 fructose-6-phosphate aldolase -
  HMPREF9319_RS01675 (HMPREF9319_0333) recP/tkt 333126..335111 (+) 1986 WP_003063475.1 transketolase Machinery gene
  HMPREF9319_RS01680 (HMPREF9319_0334) - 335252..335554 (+) 303 WP_003063477.1 bacteriocin immunity protein -
  HMPREF9319_RS01685 (HMPREF9319_0335) pptA 335569..336303 (+) 735 WP_003063479.1 ABC transporter ATP-binding protein Regulator
  HMPREF9319_RS01690 (HMPREF9319_0336) - 336308..337933 (+) 1626 WP_003063481.1 hypothetical protein -
  HMPREF9319_RS01695 (HMPREF9319_0337) proB 338035..338838 (+) 804 WP_041974199.1 glutamate 5-kinase -
  HMPREF9319_RS01700 (HMPREF9319_0338) - 338853..340103 (+) 1251 WP_041974196.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71249.24 Da        Isoelectric Point: 4.8558

>NTDB_id=989375 HMPREF9319_RS01675 WP_003063475.1 333126..335111(+) (recP/tkt) [Streptococcus equinus ATCC 700338]
MTFDAIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRSWSNRDRFVLSAGHGSALLYSLLH
LSGYNVSIDDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFNIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSKAFTEDIKGKFEAYGWQHILVEDGNDLEAIAKAIEEAKAETE
KPSIIEVKTIIGFGAEKQGTSAVHGAPLGVDGIAYAKKSYGWEYPEFTVPEEVAKRFEVGIKFRGEAAENAWDTKFREYE
AAYPELAAEYKAAFANKPVDVTLEDFEIGTSLASRSSSQQAIQQISAQVPSFWGGSADLSASNNTMVKVESDFQPDNYLG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQQLPTVYVMTHDSIAVGEDGPTHEPVEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETDRPTMLILTRQNLPVLEGTKELAAEGVNKGAYILSEAKGDLDGILIATGSEV
KLALDTQATLEAKGVHVRVVSMPAQNIFDEQDAAYKESILPANVTKRLAIEAGSSFGWGKYVGLQGKTLTIDTWGASAPG
AKIFEEYGFTVDNAVNLYESL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=989375 HMPREF9319_RS01675 WP_003063475.1 333126..335111(+) (recP/tkt) [Streptococcus equinus ATCC 700338]
ATGACATTTGATGCTATTGATCAGTTGGCAGTCAATACTGTCCGTACGCTCTCAATTGATGCCATTCAGGCAGCTAATTC
AGGTCACCCTGGTCTTCCAATGGGAGCTGCACCTATGGCTTATGTTCTTTGGAATCATGTAATGAATGTTAATCCGAAGA
CAAGCCGTTCTTGGTCTAACCGAGATCGTTTTGTACTATCTGCAGGACATGGTTCTGCCCTTTTATACAGCCTTCTTCAT
CTATCAGGTTACAATGTTAGCATTGATGATTTGAAGAATTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAAGT
CAATCATACAGACGGTGTTGAAGCTACAACTGGACCTCTTGGGCAAGGGATTGCCAATGCTGTTGGTATGGCAATGGCAG
AAGCTCACTTAGCAGCTAAATTTAACAAACCAGGATTTAATATCGTTGACCACTACACTTATGCTTTGCATGGTGACGGT
TGCTTGATGGAAGGTGTCAGTCAAGAAGCTGCCAGCCTTGCTGGACATCTTAAACTTGGCAAATTAGTCCTTCTTTACGA
TTCAAACGACATTTCACTTGACGGTCCAACATCAAAAGCTTTCACAGAAGATATCAAAGGTAAATTTGAAGCTTACGGTT
GGCAACACATTCTGGTTGAAGATGGTAATGACCTCGAAGCGATTGCTAAAGCTATCGAAGAAGCAAAAGCTGAAACTGAA
AAACCATCTATTATCGAAGTGAAAACAATCATTGGTTTCGGTGCTGAAAAACAAGGAACATCAGCTGTTCACGGTGCCCC
TCTTGGCGTTGATGGCATTGCTTACGCTAAAAAATCTTACGGTTGGGAATATCCAGAATTCACAGTACCAGAAGAGGTGG
CTAAACGCTTTGAAGTTGGTATCAAATTCCGTGGTGAAGCTGCTGAAAATGCATGGGATACTAAATTCCGTGAATACGAA
GCTGCTTATCCAGAATTAGCCGCTGAATACAAAGCAGCATTCGCTAACAAACCAGTTGACGTGACACTTGAAGATTTCGA
AATCGGTACAAGCCTTGCTAGCCGTTCATCAAGTCAACAAGCTATCCAACAAATCTCAGCACAAGTGCCATCATTCTGGG
GTGGTTCAGCTGACCTTTCTGCATCAAACAATACAATGGTCAAAGTAGAATCTGATTTCCAACCAGACAACTACCTTGGT
CGTAATATTTGGTTTGGTGTGCGTGAATTTGCCATGGCAGCTGCCATGAACGGTATTGCCCTTCATGGTGGTACTCGTGT
TTACGGTGGTACATTCTTCGTATTCTCAAACTACCTTCTTCCAGCTGTTCGTATGGCTGCTCTTCAACAATTACCAACGG
TTTATGTCATGACGCATGATTCAATCGCTGTCGGTGAAGACGGACCAACTCACGAACCAGTTGAACAATTGGCTAGCGTT
CGTTCTATGCCTAACCTTAACGTTATCCGCCCTGCTGACGGTAACGAAACAAATGCTGCATGGAAACGTGCTCTTGCTGA
AACTGATCGTCCAACAATGCTCATCTTGACACGTCAAAATCTTCCTGTCCTTGAAGGGACAAAAGAATTGGCAGCAGAAG
GTGTTAATAAAGGTGCTTATATCCTTTCAGAAGCAAAAGGTGACCTTGACGGTATCCTTATTGCAACAGGTTCTGAAGTG
AAATTGGCGCTTGATACGCAAGCTACTTTGGAAGCAAAAGGTGTTCATGTTCGTGTGGTTTCAATGCCAGCACAAAACAT
CTTTGACGAACAAGACGCTGCTTATAAAGAAAGCATTCTTCCAGCTAACGTCACGAAACGTTTGGCTATCGAAGCTGGTT
CGAGCTTTGGTTGGGGCAAATACGTTGGTCTCCAAGGTAAAACTCTTACAATCGATACTTGGGGCGCATCTGCACCAGGC
GCCAAAATCTTTGAAGAATACGGCTTCACAGTTGATAACGCTGTAAATCTTTATGAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PBW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.295

99.546

0.57

Multiple sequence alignment