Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAG068_RS22055 Genome accession   NZ_CP152427
Coordinates   4256355..4258691 (-) Length   778 a.a.
NCBI ID   WP_342715812.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4251355..4263691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS22030 (AAG068_22030) - 4254022..4254363 (+) 342 Protein_4286 PH domain-containing protein -
  AAG068_RS22035 (AAG068_22035) - 4254402..4255469 (-) 1068 WP_342715810.1 AI-2E family transporter -
  AAG068_RS22040 (AAG068_22040) - 4255646..4255858 (+) 213 WP_342715811.1 hypothetical protein -
  AAG068_RS22045 (AAG068_22045) - 4255892..4256020 (-) 129 WP_098670102.1 YrzQ family protein -
  AAG068_RS22050 (AAG068_22050) - 4256039..4256227 (-) 189 WP_000469281.1 hypothetical protein -
  AAG068_RS22055 (AAG068_22055) recD2 4256355..4258691 (-) 2337 WP_342715812.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAG068_RS22060 (AAG068_22060) - 4258790..4259449 (-) 660 WP_000066395.1 tetratricopeptide repeat protein -
  AAG068_RS22065 (AAG068_22065) mnmA 4259560..4260675 (-) 1116 WP_342715813.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAG068_RS22070 (AAG068_22070) - 4260692..4261837 (-) 1146 WP_342715814.1 cysteine desulfurase family protein -
  AAG068_RS22075 (AAG068_22075) - 4261873..4262289 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87339.76 Da        Isoelectric Point: 5.1425

>NTDB_id=989333 AAG068_RS22055 WP_342715812.1 4256355..4258691(-) (recD2) [Bacillus paramycoides strain JYZ-SD5]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDITSCIEMMQSEGKVIIEEERIYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTSIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGINRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=989333 AAG068_RS22055 WP_342715812.1 4256355..4258691(-) (recD2) [Bacillus paramycoides strain JYZ-SD5]
ATGGGAAATCAACATGCAATGGATTTGTTTGAAGAAGAGAAAAAGTTTATAAAAGCTCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGCCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTTGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGACGCGTTAAATGGTGTTGTTAACAAACAAAAAGCGCAGGAAATATATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGCATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAAAATGTATCA
TTGCAGCTTGGCCATGTTTATATGGGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGACATTACAAGTTGCATTGAAATGATGCAAAGTGAAGGGAAGGTCATCATAGAAGAAGAACGGATAT
ATTTAGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTAGGCTTATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAATGTGCAGTATGCACCATTTCAGCAAGA
AGCAATTCAAACGGCGCTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGCTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAACGTAATGAAACGGATCCGGTACAAGGGAAATTGCTCATTATTGATGAAT
TTTCAATGGTTGACATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAGCATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGTCAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACGGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTTATTCAACTTGCCCATGCGATAAAAAATGGAACGCTTCCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCATTTATCGGTTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAGAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCTCCGATGTATCGTGGACCTGCCGGCATTAA
TGTACTAAACGAAGCGTTACAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGACGAGGCGATAAAGTATTGCAGCTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATTGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACGCATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATCTAATTTATACAGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGCGAGGAAGCCGCTTTCCAGTCTGGTATAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTAACAGTAAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment