Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AAFF19_RS22120 Genome accession   NZ_CP152407
Coordinates   4724191..4725789 (-) Length   532 a.a.
NCBI ID   WP_182120322.1    Uniprot ID   -
Organism   Acidovorax sp. FHTAMBA     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4719191..4730789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS22080 (AAFF19_22080) - 4719289..4719720 (+) 432 WP_342721008.1 hypothetical protein -
  AAFF19_RS22085 (AAFF19_22085) - 4719638..4719874 (+) 237 WP_342721010.1 hypothetical protein -
  AAFF19_RS22090 (AAFF19_22090) - 4719896..4720774 (+) 879 WP_342721011.1 ATP-binding cassette domain-containing protein -
  AAFF19_RS22095 (AAFF19_22095) - 4720865..4721293 (+) 429 WP_182120327.1 GNAT family N-acetyltransferase -
  AAFF19_RS22100 (AAFF19_22100) - 4721360..4721590 (-) 231 WP_182120326.1 hypothetical protein -
  AAFF19_RS22105 (AAFF19_22105) - 4721898..4722383 (-) 486 WP_182120325.1 putative toxin-antitoxin system toxin component, PIN family -
  AAFF19_RS22110 (AAFF19_22110) - 4722373..4723668 (-) 1296 WP_182120324.1 THUMP domain-containing protein -
  AAFF19_RS22115 (AAFF19_22115) - 4723693..4724124 (-) 432 WP_182120323.1 thioesterase family protein -
  AAFF19_RS22120 (AAFF19_22120) rpoN/rpoN1 4724191..4725789 (-) 1599 WP_182120322.1 RNA polymerase factor sigma-54 Machinery gene
  AAFF19_RS22125 (AAFF19_22125) lptB 4725878..4726675 (-) 798 WP_246331008.1 LPS export ABC transporter ATP-binding protein -
  AAFF19_RS22130 (AAFF19_22130) lptA 4726687..4727334 (-) 648 WP_008906598.1 lipopolysaccharide transport periplasmic protein LptA -
  AAFF19_RS22135 (AAFF19_22135) - 4727444..4728100 (-) 657 WP_182120321.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAFF19_RS22140 (AAFF19_22140) - 4728169..4728810 (-) 642 WP_182120320.1 SPOR domain-containing protein -
  AAFF19_RS22145 (AAFF19_22145) argS 4728824..4730533 (-) 1710 WP_008906601.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58650.83 Da        Isoelectric Point: 4.6320

>NTDB_id=988927 AAFF19_RS22120 WP_182120322.1 4724191..4725789(-) (rpoN/rpoN1) [Acidovorax sp. FHTAMBA]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERNADEAPREEFGLEAADTPAQADDYSVDDAMF
SGAVSASGTSAESQNEAEIPSAGADEPDWSGDGTVEMAPNDAEWGGDAPARTRNDAEGDEADATELARTHESLTAFLHRQ
ALSLRLSEVDTAALRFLIESLNDDGYLEESLEELAISLAGPEDLEQIEELVHRFTVAQRLLQSLEPVGVGARNLAECLTL
QLTALAADEDSDADPDTVQTALRICQQPLEMLARRDIRRLTQLCGDGEERTRAAMALIARLEPRPGRRFADVERNIIIPD
VIVRKAGREGSQRGRDGQHNFIVSLNPDVMPRLRVHDIYAGALRGHKGGEGHQGMQQRLQEARWFIKNIQQRFDTILRVS
RAIVERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALI
KQFVAAENPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=988927 AAFF19_RS22120 WP_182120322.1 4724191..4725789(-) (rpoN/rpoN1) [Acidovorax sp. FHTAMBA]
ATGAAGCCTGGACTGTCGCTGCGCGTCTCGCAGCACCTTGCATTGACTCCCCAGCTCCAGCAGTCCATCCGGCTGCTGCA
GTTGTCCACGCTCGAACTCTCGCAGGAAGTCGAGCAGATGCTCGACGAAAACCCGTTCCTTGAGCGCAATGCCGACGAAG
CACCGCGCGAGGAGTTTGGCCTGGAAGCCGCCGACACGCCCGCACAGGCCGACGACTACAGCGTCGACGATGCTATGTTT
TCAGGAGCTGTCAGTGCAAGCGGTACTAGCGCTGAGAGCCAAAACGAGGCTGAAATCCCCAGTGCAGGTGCCGACGAGCC
CGACTGGAGCGGCGACGGCACGGTAGAGATGGCGCCCAACGACGCCGAGTGGGGTGGCGACGCCCCGGCGCGCACCCGCA
ACGATGCGGAAGGGGACGAGGCCGACGCCACCGAGCTGGCCCGAACGCACGAGTCGCTCACCGCCTTTTTGCACCGCCAG
GCGCTGTCGCTGCGGCTGTCCGAAGTGGACACGGCCGCGCTGCGTTTTCTCATCGAATCGCTGAACGACGATGGCTACCT
TGAAGAGTCGCTCGAAGAGCTGGCCATCAGCCTGGCAGGGCCCGAAGACCTGGAGCAGATCGAGGAACTGGTGCACCGCT
TCACGGTGGCCCAGCGCCTGCTGCAAAGCCTGGAACCCGTGGGCGTGGGTGCGCGCAACCTGGCCGAGTGCCTCACCCTG
CAGCTCACCGCCCTGGCGGCCGACGAAGACAGCGACGCCGACCCCGACACCGTGCAGACCGCGCTGCGCATCTGCCAGCA
GCCGCTGGAGATGCTGGCCCGCCGCGACATCCGCCGCCTGACGCAGCTGTGTGGCGATGGCGAAGAGCGCACCCGCGCCG
CCATGGCCCTCATCGCCCGCCTGGAGCCCCGCCCCGGGCGCCGCTTTGCGGATGTGGAGCGCAACATCATCATTCCCGAT
GTGATCGTGCGCAAAGCCGGGCGCGAAGGCTCGCAGCGGGGCCGCGATGGCCAGCACAACTTCATCGTCAGCCTCAACCC
CGACGTGATGCCCCGCCTGCGCGTGCACGACATCTATGCCGGTGCGTTGCGCGGCCACAAGGGCGGCGAGGGCCACCAGG
GCATGCAGCAGCGCCTGCAAGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATATTGCGCGTCTCG
CGCGCCATCGTGGAGCGGCAAAAAAACTTCTTCACCCATGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGACATCGC
CGACGAACTGGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAATACATGGCCACGCCGATCGGCACCTACG
AGCTCAAGTACTTCTTTGGCTCGGGCCTGGGCACCGAAACCGGTGGCAATGCATCCAGCACGGCGGTGCGCGCCCTCATC
AAGCAGTTTGTCGCCGCCGAGAACCCCGCCAAGCCGCTGTCCGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCAT
CGAGTGCGCACGCCGCACCGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCGGCCAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-359)

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.477

100

0.538

Multiple sequence alignment