Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNR93_RS07755 Genome accession   NZ_CP184736
Coordinates   1562876..1563661 (-) Length   261 a.a.
NCBI ID   WP_021143055.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557876..1568661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS07735 (ACNR93_07735) - 1558294..1559205 (-) 912 WP_033153255.1 DMT family transporter -
  ACNR93_RS07740 (ACNR93_07740) gatB 1559380..1560822 (-) 1443 WP_021143052.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  ACNR93_RS07745 (ACNR93_07745) gatA 1560822..1562288 (-) 1467 WP_024343597.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACNR93_RS07750 (ACNR93_07750) gatC 1562288..1562590 (-) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACNR93_RS07755 (ACNR93_07755) codY 1562876..1563661 (-) 786 WP_021143055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNR93_RS07760 (ACNR93_07760) - 1563866..1565080 (-) 1215 WP_420543512.1 pyridoxal phosphate-dependent aminotransferase -
  ACNR93_RS07765 (ACNR93_07765) - 1565117..1566859 (-) 1743 WP_420543513.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  ACNR93_RS07770 (ACNR93_07770) - 1567189..1567641 (+) 453 WP_021143058.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28891.01 Da        Isoelectric Point: 4.4574

>NTDB_id=988922 ACNR93_RS07755 WP_021143055.1 1562876..1563661(-) (codY) [Streptococcus equinus strain NM-2-29]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGNLLGYAMKYKTNTDRVEEFFQAKQFPEEYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=988922 ACNR93_RS07755 WP_021143055.1 1562876..1563661(-) (codY) [Streptococcus equinus strain NM-2-29]
ATGCCGAATTTATTAGAAAAAACTAGAAAGATTACGTCAATTTTGCAACGCTCAGTTGATAGCCTTGATACCGAATTACC
ATATAACACAATGGCTGCTCAACTTGCTGACATCATTGACTGTAACTCTTGCATCATCAACGGAGGAGGAAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGTGTTGAAGAATTCTTTCAAGCGAAACAATTCCCTGAAGAATACGTA
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATCTTCCCAGTTGAATCAAA
AGATATTTACCCTGATGGATTAACAACTATCGCTCCAATCTACGGTGGCGGTATGCGTCTTGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTCAGAAGACGATTTGATCCTTGTCGAAATCGCCTCTACAGTAGTTGGTATCCAATTACTTAAC
CTTCAAACTGAAAACCTTGAAGAAACAATTCGTAAACAAACAGCTGTTAACATGGCGATTAACACACTATCTTACTCAGA
AATGAAAGCAGTATCTGCTATTTTGGGTGAACTTGATGGTACAGAAGGTCGTTTGACTGCATCTGTTATCGCTGACCGTA
TTGGTATTACACGTTCTGTTATCGTTAATGCCCTACGTAAATTGGAATCAGCTGGTATCATTGAAAGCCGTTCATTGGGT
ATGAAAGGTACTTACCTTAAAGTTATCAATGAAGGTATCTTCGACAAACTTAAAGAATACAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494