Detailed information NTG0988800

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AAHB48_RS09955
• Genome accession: NZ_CP152383
• Coordinates: 2120221..2120922 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii isolate SRM1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2115221..2125922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHB48_RS09925 (AAHB48_09925)	-	2115527..2115970 (-)	444	WP_001246675.1	SRPBCC family protein	-
AAHB48_RS09930 (AAHB48_09930)	tadA	2116040..2116543 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
AAHB48_RS09935 (AAHB48_09935)	-	2116550..2117674 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AAHB48_RS09940 (AAHB48_09940)	ung	2117671..2118384 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
AAHB48_RS09945 (AAHB48_09945)	-	2118435..2119031 (-)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
AAHB48_RS09950 (AAHB48_09950)	gspK	2119262..2120221 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
AAHB48_RS09955 (AAHB48_09955)	xcpW	2120221..2120922 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AAHB48_RS09960 (AAHB48_09960)	xcpV	2120922..2121302 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AAHB48_RS09965 (AAHB48_09965)	-	2121292..2121846 (-)	555	WP_000841373.1	type II secretion system protein	-
AAHB48_RS09970 (AAHB48_09970)	-	2121856..2122464 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AAHB48_RS09975 (AAHB48_09975)	-	2122502..2123275 (-)	774	WP_000497298.1	TatD family hydrolase	-
AAHB48_RS09980 (AAHB48_09980)	-	2123293..2123634 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
AAHB48_RS09985 (AAHB48_09985)	-	2123646..2124626 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
AAHB48_RS09990 (AAHB48_09990)	kdsB	2124638..2125399 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=988800 AAHB48_RS09955 WP_000594589.1 2120221..2120922(-) (xcpW) [Acinetobacter baumannii isolate SRM1]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=988800 AAHB48_RS09955 WP_000594589.1 2120221..2120922(-) (xcpW) [Acinetobacter baumannii isolate SRM1]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996