Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WN937_RS00685 Genome accession   NZ_CP152363
Coordinates   149552..150277 (-) Length   241 a.a.
NCBI ID   WP_069537266.1    Uniprot ID   A0AA47JGR9
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144552..155277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS00660 (WN937_00660) - 145671..146162 (+) 492 WP_005458943.1 type II secretion system protein M -
  WN937_RS00665 (WN937_00665) - 146164..146925 (+) 762 WP_020904372.1 type II secretion system protein N -
  WN937_RS00670 (WN937_00670) cysQ 147212..148039 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WN937_RS00675 (WN937_00675) nudE 148080..148649 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  WN937_RS00680 (WN937_00680) nfuA 148870..149454 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  WN937_RS00685 (WN937_00685) comF 149552..150277 (-) 726 WP_069537266.1 phosphoribosyltransferase family protein Machinery gene
  WN937_RS00690 (WN937_00690) bioH 150362..151129 (+) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  WN937_RS00695 (WN937_00695) - 151253..151717 (+) 465 WP_005459035.1 hypothetical protein -
  WN937_RS00700 (WN937_00700) - 151853..154174 (-) 2322 WP_069537262.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27646.76 Da        Isoelectric Point: 8.7043

>NTDB_id=988653 WN937_RS00685 WP_069537266.1 149552..150277(-) (comF) [Vibrio parahaemolyticus strain vp-HL-201910]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQSFKDHGQTWHVHALTQLLAQRILTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=988653 WN937_RS00685 WP_069537266.1 149552..150277(-) (comF) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCTCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAAAGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTTAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment