Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACOB87_RS35290 Genome accession   NZ_CP184648
Coordinates   7963034..7964389 (+) Length   451 a.a.
NCBI ID   WP_266766961.1    Uniprot ID   -
Organism   Streptomyces sp. YS-B37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7958034..7969389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB87_RS35265 (ACOB87_35265) vraR 7958594..7959217 (-) 624 WP_420312268.1 response regulator Regulator
  ACOB87_RS35270 (ACOB87_35270) - 7959214..7960476 (-) 1263 WP_420312269.1 sensor histidine kinase -
  ACOB87_RS35275 (ACOB87_35275) - 7960473..7961324 (-) 852 WP_420312270.1 ABC transporter permease -
  ACOB87_RS35280 (ACOB87_35280) - 7961321..7962187 (-) 867 WP_420312271.1 ABC transporter ATP-binding protein -
  ACOB87_RS35285 (ACOB87_35285) - 7962330..7962986 (+) 657 WP_328832618.1 vitamin K epoxide reductase family protein -
  ACOB87_RS35290 (ACOB87_35290) rarA 7963034..7964389 (+) 1356 WP_266766961.1 replication-associated recombination protein A Machinery gene
  ACOB87_RS35295 (ACOB87_35295) rpsD 7964706..7965320 (+) 615 WP_019066381.1 30S ribosomal protein S4 -
  ACOB87_RS35300 (ACOB87_35300) - 7965351..7967519 (-) 2169 WP_420312272.1 ATP-binding protein -
  ACOB87_RS35305 (ACOB87_35305) - 7967726..7968172 (+) 447 WP_266766959.1 DUF948 domain-containing protein -
  ACOB87_RS35310 (ACOB87_35310) - 7968180..7968530 (+) 351 WP_266766958.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48577.01 Da        Isoelectric Point: 6.2022

>NTDB_id=988302 ACOB87_RS35290 WP_266766961.1 7963034..7964389(+) (rarA) [Streptomyces sp. YS-B37]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRALLRRALSEDRGLKNAVTLPEDSENHLLRIAGGDARRALTALEAAAGAALDKGEPD
ITLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGHAGPVPMHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPEELKDREYYEPTRHGAEARYADAVEWTRQHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=988302 ACOB87_RS35290 WP_266766961.1 7963034..7964389(+) (rarA) [Streptomyces sp. YS-B37]
GTGGAGCCCGACCTATTCACCGCCGCCGCGGAAGAACGCCAGGAGAAGGACCCGTCCAGCAGTCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTGGTCGGCG
AGGGCGCGGGCGGCCCCGCCGGACCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCGAAGGCGACCAACAAGCGGTTCGTGGAGCTGTCCGCCATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGAGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTGACCCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTCCTGTCCCGCTCCCTCCTCCTCACCCTCGAACCCCTCACGGACGACGACCTGCGCGCCCTGCT
CCGCCGCGCCCTGAGCGAGGACCGCGGCCTGAAGAACGCGGTCACCCTCCCCGAGGACAGCGAGAACCACCTGCTGCGCA
TCGCCGGCGGAGACGCCCGCCGCGCGCTCACCGCTCTGGAGGCCGCCGCCGGGGCCGCCCTCGACAAGGGCGAGCCGGAC
ATCACCCTCCAGACCCTGGAGGAGACCGTCGACCGCGCGGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCCGACGTCGACGCGGCCCTGCACTACCTGGCCCGCATGATCGAGGCGG
GCGAGGACCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCGAGCGAGGACATCGGCCTGGCGGATCCGAACGCGCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTGGCGATGATCGGCTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTAGCGCCCAAGTCGAACGCGGCGACCACCGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CGGGCCCGGTGCCCATGCATCTGCGGGACGGGCACTACAAGGGAGCGGCCAAGCTCGGGCACGCGCAGGGGTACGTCTAC
CCGCACGACCTGCCGGAGGGCATCGCCGAGCAGCAGTACGCCCCGGAGGAGCTGAAGGACCGCGAGTACTACGAGCCGAC
CCGCCACGGGGCGGAGGCGCGGTACGCGGACGCGGTGGAGTGGACCAGGCAGCACCTTGGTCGTAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.649

96.009

0.419