Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AAEU35_RS09055 Genome accession   NZ_CP152294
Coordinates   1795262..1796200 (+) Length   312 a.a.
NCBI ID   WP_317141326.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790262..1801200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS09035 - 1791556..1792182 (+) 627 WP_004254567.1 ABC transporter ATP-binding protein -
  AAEU35_RS09040 - 1792339..1792797 (+) 459 WP_058223015.1 hypothetical protein -
  AAEU35_RS09045 typA 1792985..1794817 (+) 1833 WP_025016832.1 translational GTPase TypA -
  AAEU35_RS09050 - 1794918..1795169 (+) 252 WP_004254583.1 DUF3165 family protein -
  AAEU35_RS09055 comYH 1795262..1796200 (+) 939 WP_317141326.1 class I SAM-dependent methyltransferase Machinery gene
  AAEU35_RS09060 - 1796395..1797582 (+) 1188 WP_004254593.1 acetate kinase -
  AAEU35_RS09065 - 1797739..1798926 (+) 1188 WP_015427114.1 acetate kinase -
  AAEU35_RS09070 - 1799060..1799512 (+) 453 WP_010906263.1 hypothetical protein -
  AAEU35_RS09075 pyrH 1799597..1800313 (+) 717 WP_021464089.1 UMP kinase -
  AAEU35_RS09080 frr 1800526..1801083 (+) 558 WP_004254618.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34842.95 Da        Isoelectric Point: 4.3396

>NTDB_id=988197 AAEU35_RS09055 WP_317141326.1 1795262..1796200(+) (comYH) [Lactococcus lactis strain Q13]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNADFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=988197 AAEU35_RS09055 WP_317141326.1 1795262..1796200(+) (comYH) [Lactococcus lactis strain Q13]
ATGGATATGGAAAAAGTAGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGATTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment