Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAEU35_RS06545 Genome accession   NZ_CP152294
Coordinates   1335868..1336656 (-) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330868..1341656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS06525 gatB 1331515..1332948 (-) 1434 WP_058223403.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AAEU35_RS06530 - 1332988..1333590 (-) 603 WP_317141431.1 NUDIX hydrolase -
  AAEU35_RS06535 gatA 1333594..1335054 (-) 1461 WP_058223404.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  AAEU35_RS06540 gatC 1335054..1335359 (-) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  AAEU35_RS06545 codY 1335868..1336656 (-) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAEU35_RS06550 - 1336809..1338023 (-) 1215 WP_317141430.1 pyridoxal phosphate-dependent aminotransferase -
  AAEU35_RS06555 - 1338092..1339675 (-) 1584 WP_058222936.1 APC family permease -
  AAEU35_RS06560 - 1339871..1340110 (-) 240 WP_010905161.1 hypothetical protein -
  AAEU35_RS06565 - 1340122..1340331 (-) 210 WP_010905160.1 hypothetical protein -
  AAEU35_RS06570 - 1340496..1341287 (-) 792 WP_058222937.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=988180 AAEU35_RS06545 WP_003129722.1 1335868..1336656(-) (codY) [Lactococcus lactis strain Q13]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=988180 AAEU35_RS06545 WP_003129722.1 1335868..1336656(-) (codY) [Lactococcus lactis strain Q13]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment