Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAB158_RS17885 Genome accession   NZ_CP152291
Coordinates   3721768..3724173 (-) Length   801 a.a.
NCBI ID   WP_342614188.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3716768..3729173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS17860 (AAB158_17860) - 3717999..3719075 (-) 1077 WP_192205808.1 AI-2E family transporter -
  AAB158_RS17865 (AAB158_17865) - 3719305..3719520 (-) 216 WP_063233024.1 hypothetical protein -
  AAB158_RS17870 (AAB158_17870) - 3719510..3720052 (-) 543 WP_342614187.1 PRC-barrel domain-containing protein -
  AAB158_RS17875 (AAB158_17875) - 3720341..3721111 (-) 771 WP_192205816.1 TPM domain-containing protein -
  AAB158_RS17880 (AAB158_17880) - 3721111..3721677 (-) 567 WP_192205818.1 LemA family protein -
  AAB158_RS17885 (AAB158_17885) recD2 3721768..3724173 (-) 2406 WP_342614188.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAB158_RS17890 (AAB158_17890) - 3724210..3724875 (-) 666 WP_342614189.1 tetratricopeptide repeat protein -
  AAB158_RS17895 (AAB158_17895) mnmA 3724997..3726112 (-) 1116 WP_342614190.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAB158_RS17900 (AAB158_17900) - 3726142..3727287 (-) 1146 WP_342614191.1 cysteine desulfurase family protein -
  AAB158_RS17905 (AAB158_17905) - 3727348..3727767 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90581.30 Da        Isoelectric Point: 4.7950

>NTDB_id=988112 AAB158_RS17885 WP_342614188.1 3721768..3724173(-) (recD2) [Peribacillus frigoritolerans strain IMGN5]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLQEILSEEEMPAEKEEVHQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=988112 AAB158_RS17885 WP_342614188.1 3721768..3724173(-) (recD2) [Peribacillus frigoritolerans strain IMGN5]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCGATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGTAAGGATCTGCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGGATCGGGAAAAAAACAGCTGAAAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGTCTCTATGATACATTGGTCGAGCATCAA
GGGCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATATATCAAATGTATAA
GCAGGATACAATCACGATGGTTCAGGGAAATCCGTATAAGCTTGTTGAGGATATTGAAGGGATTGGCTTTGGAAGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCATCCCGATCGAATCAAGGCTGCGTGTTTGTATACGCTTGAATCA
CAATGCCTTCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCTGTCAAACGTCTTCTGGAGGAAAATAA
ACGGGACCGTATTGAGTTTACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGAAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCACTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGAGAGCTGGAAGAACGGCTGGATGTATCTTATGCACC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAACTATATGCAGAGCTGCATGGTGTATCCATGGACATTAATGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACTGGCCGTGCAGCGAAACGAATGGCCGAATCGACTGGGCTCCCGGC
TGTTACGATTCACCGTTTGCTGGGGTGGAACGGGAGCGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCCATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTTCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGACCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATTCGCTGCCAAACTGGTCAAATCCCCCAA
GTAATCGAGAAGGTGGTTGCCAATGCGAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTAAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAGAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAACCGGAGGAGGGGGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATCTTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCATTCGA
AGGCATTGAAGTGACTTATACGAAACAGGACTTGAACCAGATAACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGTGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGCGAAGAAGATGCATTCCGTTTAGGGATCGAGCGGAATGATGAGAT
GCGCCGAAAAACGACTTTGCGTGAAAAGCTGCAAGAGATTTTGAGTGAAGAAGAAATGCCGGCGGAAAAGGAAGAGGTAC
ATCAACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.547

100

0.625

Multiple sequence alignment