Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACOCIA_RS00190 Genome accession   NZ_CP184611
Coordinates   40984..42249 (-) Length   421 a.a.
NCBI ID   WP_033134896.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CQPMC-AB11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35984..47249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCIA_RS00160 (ACOCIA_00160) pncA 36201..36845 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  ACOCIA_RS00165 (ACOCIA_00165) dapA 37175..38068 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACOCIA_RS00170 (ACOCIA_00170) - 38084..38686 (+) 603 WP_001177091.1 hypothetical protein -
  ACOCIA_RS00175 (ACOCIA_00175) purC 38724..39443 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACOCIA_RS00180 (ACOCIA_00180) - 39636..39839 (+) 204 WP_000418559.1 hypothetical protein -
  ACOCIA_RS00185 (ACOCIA_00185) - 40130..40969 (+) 840 WP_032050079.1 formate/nitrite transporter family protein -
  ACOCIA_RS00190 (ACOCIA_00190) rarA 40984..42249 (-) 1266 WP_033134896.1 replication-associated recombination protein A Machinery gene
  ACOCIA_RS00195 (ACOCIA_00195) - 42355..43527 (-) 1173 WP_032050080.1 PQQ-dependent sugar dehydrogenase -
  ACOCIA_RS00200 (ACOCIA_00200) - 43637..44095 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ACOCIA_RS00205 (ACOCIA_00205) - 44290..44448 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ACOCIA_RS00210 (ACOCIA_00210) - 44621..45358 (+) 738 WP_000100768.1 dienelactone hydrolase family protein -
  ACOCIA_RS00215 (ACOCIA_00215) - 45544..45906 (+) 363 WP_000130110.1 HIT family protein -
  ACOCIA_RS00220 (ACOCIA_00220) mutY 46047..47081 (+) 1035 WP_029424044.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46906.56 Da        Isoelectric Point: 5.8354

>NTDB_id=987976 ACOCIA_RS00190 WP_033134896.1 40984..42249(-) (rarA) [Acinetobacter baumannii strain CQPMC-AB11]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPAELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=987976 ACOCIA_RS00190 WP_033134896.1 40984..42249(-) (rarA) [Acinetobacter baumannii strain CQPMC-AB11]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCTCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTTG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTTTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGATTACTTGCCAGCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387