Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NYE63_RS19665 Genome accession   NZ_CP152053
Coordinates   4021206..4023611 (-) Length   801 a.a.
NCBI ID   WP_342602370.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4016206..4028611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS19640 (NYE63_19635) - 4017661..4018737 (-) 1077 WP_144479414.1 AI-2E family transporter -
  NYE63_RS19645 (NYE63_19640) - 4018965..4019180 (-) 216 WP_063233024.1 hypothetical protein -
  NYE63_RS19650 (NYE63_19645) - 4019170..4019634 (-) 465 WP_342602367.1 PRC-barrel domain-containing protein -
  NYE63_RS19655 (NYE63_19650) - 4019776..4020549 (-) 774 WP_342602368.1 TPM domain-containing protein -
  NYE63_RS19660 (NYE63_19655) - 4020549..4021115 (-) 567 WP_342602369.1 LemA family protein -
  NYE63_RS19665 (NYE63_19660) recD2 4021206..4023611 (-) 2406 WP_342602370.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NYE63_RS19670 (NYE63_19665) - 4023648..4024313 (-) 666 WP_144479424.1 tetratricopeptide repeat protein -
  NYE63_RS19675 (NYE63_19670) mnmA 4024437..4025552 (-) 1116 WP_063232954.1 tRNA 2-thiouridine(34) synthase MnmA -
  NYE63_RS19680 (NYE63_19675) - 4025582..4026727 (-) 1146 WP_342602371.1 cysteine desulfurase family protein -
  NYE63_RS19685 (NYE63_19680) - 4026788..4027207 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90617.43 Da        Isoelectric Point: 4.9086

>NTDB_id=987023 NYE63_RS19665 WP_342602370.1 4021206..4023611(-) (recD2) [Peribacillus sp. FSL E2-0159]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHHLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKEKAHQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=987023 NYE63_RS19665 WP_342602370.1 4021206..4023611(-) (recD2) [Peribacillus sp. FSL E2-0159]
TTGAGCCAGCAAGATTCGTTGGATTTATTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATATCATGTAGAGCATTTTCGCAAGGATTTGCCTCAATCCAAGGAAGGTATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGCCTTTATGATACATTGGTAGAGCATCAA
GGTCTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATCTATCAAATGTATAA
ACAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTGGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCATCTTGGTATTTCCGGCAGTCATCCCGACCGAATCAAGGCGGCGTGCTTGTATACGCTTGAATCA
CAATGCCTCCAGGACGGGAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCTGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACTAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACTGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGATATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACCGGCCGTGCAGCGAAACGCATGGCCGAATCCACTGGGCTCCCAGC
TGTTACGATCCATCGTTTGCTTGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTAATTATCGATGAGGTTTCCATGGTGGATACTTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATCCGCTGCCAAACAGGTCAAATCCCCCAA
GTAATCGAGAAGGTGGTTGCCAACGCCAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCAGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGTGAAA
TAAAATTCGGAGATGTGATATATAGAACGGGAGATAAGGTTCTTCAGCTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACATACACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATTCATAAGTCGCAGG
GAAGCGAATTCCCGATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGGAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAAGATGCATTCCGTCTAGGGATCGAGCGTAATGATGAAAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATTTTGAGTGAAGAAGAAATGCCGGTGGAAAAGGAAAAGGCAC
ATCAACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624

Multiple sequence alignment