Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACOCJA_RS04000 Genome accession   NZ_CP184565
Coordinates   777408..778559 (-) Length   383 a.a.
NCBI ID   WP_000020355.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018043     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 772408..783559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJA_RS03980 (ACOCJA_03980) - 772804..773601 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  ACOCJA_RS03985 (ACOCJA_03985) - 773775..773990 (+) 216 WP_000026308.1 hypothetical protein -
  ACOCJA_RS03990 (ACOCJA_03990) rny 774287..775846 (-) 1560 WP_001050913.1 ribonuclease Y -
  ACOCJA_RS03995 (ACOCJA_03995) recA 776200..777243 (-) 1044 WP_000368166.1 recombinase RecA -
  ACOCJA_RS04000 (ACOCJA_04000) cinA 777408..778559 (-) 1152 WP_000020355.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACOCJA_RS04005 (ACOCJA_04005) pgsA 778784..779362 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACOCJA_RS04010 (ACOCJA_04010) - 779396..779788 (-) 393 WP_103146257.1 helix-turn-helix domain-containing protein -
  ACOCJA_RS04015 (ACOCJA_04015) - 779807..780634 (-) 828 WP_000214890.1 YmfK family protein -
  ACOCJA_RS04020 (ACOCJA_04020) ymfI 780739..781443 (-) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  ACOCJA_RS04025 (ACOCJA_04025) yfmH 781443..782729 (-) 1287 WP_000664762.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43166.44 Da        Isoelectric Point: 6.0928

>NTDB_id=986934 ACOCJA_RS04000 WP_000020355.1 777408..778559(-) (cinA) [Staphylococcus aureus strain CBTW2018043]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=986934 ACOCJA_RS04000 WP_000020355.1 777408..778559(-) (cinA) [Staphylococcus aureus strain CBTW2018043]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment