Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHB67_RS07765 Genome accession   NZ_CP152051
Coordinates   1569210..1569989 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL H8-0516     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564210..1574989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB67_RS07745 (MHB67_07745) trmFO 1564914..1566218 (+) 1305 WP_213404798.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHB67_RS07750 (MHB67_07750) xerC 1566281..1567198 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  MHB67_RS07755 (MHB67_07755) hslV 1567213..1567758 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  MHB67_RS07760 (MHB67_07760) hslU 1567775..1569175 (+) 1401 WP_213404799.1 HslU--HslV peptidase ATPase subunit -
  MHB67_RS07765 (MHB67_07765) codY 1569210..1569989 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHB67_RS07770 (MHB67_07770) flgB 1570278..1570667 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MHB67_RS07775 (MHB67_07775) flgC 1570667..1571119 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  MHB67_RS07780 (MHB67_07780) fliE 1571131..1571448 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  MHB67_RS07785 (MHB67_07785) fliF 1571498..1573090 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  MHB67_RS07790 (MHB67_07790) fliG 1573102..1574118 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  MHB67_RS07795 (MHB67_07795) fliH 1574111..1574875 (+) 765 WP_208945818.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=986922 MHB67_RS07765 WP_007499612.1 1569210..1569989(+) (codY) [Bacillus sp. FSL H8-0516]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=986922 MHB67_RS07765 WP_007499612.1 1569210..1569989(+) (codY) [Bacillus sp. FSL H8-0516]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGACATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGTGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment