Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHB51_RS05315 Genome accession   NZ_CP152046
Coordinates   1112083..1114491 (-) Length   802 a.a.
NCBI ID   WP_342559469.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL K6-0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107083..1119491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB51_RS05295 (MHB51_05295) - 1107473..1107763 (-) 291 WP_066171427.1 DUF1292 domain-containing protein -
  MHB51_RS05300 (MHB51_05300) ruvX 1107898..1108320 (-) 423 WP_107942446.1 Holliday junction resolvase RuvX -
  MHB51_RS05305 (MHB51_05305) - 1108317..1108589 (-) 273 WP_066171433.1 IreB family regulatory phosphoprotein -
  MHB51_RS05310 (MHB51_05310) alaS 1108793..1111453 (-) 2661 WP_342559161.1 alanine--tRNA ligase -
  MHB51_RS05315 (MHB51_05315) recD2 1112083..1114491 (-) 2409 WP_342559469.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHB51_RS05320 (MHB51_05320) hisA 1114985..1115740 (+) 756 WP_107943085.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MHB51_RS05325 (MHB51_05325) - 1115764..1116054 (+) 291 WP_066171443.1 hypothetical protein -
  MHB51_RS05330 (MHB51_05330) - 1116202..1116714 (-) 513 WP_342559162.1 TraR/DksA C4-type zinc finger protein -
  MHB51_RS05335 (MHB51_05335) - 1116770..1117429 (-) 660 WP_066171449.1 tetratricopeptide repeat protein -
  MHB51_RS05340 (MHB51_05340) mnmA 1117474..1118595 (-) 1122 WP_066171452.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 88933.20 Da        Isoelectric Point: 4.7642

>NTDB_id=986707 MHB51_RS05315 WP_342559469.1 1112083..1114491(-) (recD2) [Metasolibacillus sp. FSL K6-0083]
MVENLNLFELEKRFVLGRPIVSIFHNATNMYSIIRVKIQETNLAYEEKEIIVVGYFPPLSEDELYRFTGNIKTHPKYGVQ
FQIETFEKEVPATEQGVIQYLSSDLFIGIGRKTAETIVEKLGVDALKIIMDNPSALDVIPRLSDEKKQTIVDVIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYREDTITLLTENPYRLIEEIEGIGFGRADDLGSKLGITGNHPDRIKAAIFHVLTAAA
LSDGHVYLEAEQVLPTVKSMLEQSQRVEIPFEAISQACIEMREESKICGEETRMYLPSLYFSEVGIASKVLELVANNKKQ
SHFSKDEILKAIGELEERDGVQYAPSQVAAIECALQNAVMILTGGPGTGKTTVVKGLVEVYAELHGLSLDPKTYAKKEEP
FPIILVAPTGRAAKRLAESTSLPAMTIHRLLGFTGQEKEEETEREITGRLVIVDEMSMVDTWLAHQLLKSLAKDVQVVFV
GDQDQLPPVGPGQVLKDLLTSKQVPTVELTDVYRQAEGSTIIDIAHQIKQGTVPPTITQKTADRSFIQASTGQIVSVVTQ
IVKSATAKGQAIRDIQVLAPMYKGPAGIDALNKQIQELVNPNDGTRKELAFGDTVYRIGDKVLQLVNQPDSNVFNGDMGE
VVAIIKAKETVEKQDLLVVSYDGIEVTYQRGDLNQITLAYCCSIHKSQGSEFQTVIMPIVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLAQGLMKTDDLQRFTSLTARLNPMDEEIVEVIAEAQESYTTSTPPILNAETAPYIHPLIGMEGIAPSDF
MK

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=986707 MHB51_RS05315 WP_342559469.1 1112083..1114491(-) (recD2) [Metasolibacillus sp. FSL K6-0083]
CTGGTGGAGAACTTAAATTTATTTGAGCTAGAAAAACGCTTTGTACTAGGTCGCCCAATCGTCTCTATTTTTCATAATGC
TACAAATATGTATTCTATCATACGTGTGAAAATTCAAGAAACAAATTTAGCTTATGAAGAAAAGGAGATTATCGTTGTTG
GCTATTTTCCGCCGCTGTCAGAGGATGAGCTTTATCGCTTCACAGGCAATATAAAAACACATCCCAAATACGGAGTACAG
TTTCAAATTGAGACATTTGAAAAGGAAGTACCTGCTACGGAACAGGGTGTTATTCAATATTTATCAAGCGATTTATTTAT
AGGGATTGGTCGTAAAACGGCTGAAACAATTGTTGAAAAGCTTGGTGTCGATGCATTGAAAATAATTATGGATAATCCGA
GTGCACTCGATGTGATCCCGAGATTATCTGACGAAAAAAAGCAAACAATCGTTGACGTAATCGAACAAAATTTAGGCTTA
GAGCGTGTGATGATTCAATTAAATGAGTGGGGGTTCGGACCGCAGCTCGGCATGAAAATTTATCAAACATATCGCGAGGA
CACAATCACTCTATTGACAGAAAATCCGTATCGTTTAATCGAGGAAATAGAGGGAATTGGCTTTGGACGTGCCGACGATT
TAGGCTCAAAGCTCGGCATTACAGGCAATCACCCTGACCGCATTAAAGCAGCTATTTTTCATGTTTTAACAGCAGCCGCA
TTATCCGATGGGCATGTTTATTTAGAGGCGGAGCAGGTGCTGCCGACAGTTAAGTCAATGCTAGAACAAAGCCAGCGAGT
TGAAATCCCATTTGAGGCAATTTCGCAGGCTTGCATTGAAATGCGTGAGGAGAGCAAAATTTGTGGTGAGGAAACGCGCA
TGTACTTACCATCACTCTATTTTAGTGAGGTGGGCATCGCCTCGAAAGTTTTAGAGCTTGTAGCGAACAATAAGAAGCAG
TCGCATTTTTCTAAGGATGAAATTTTAAAGGCAATTGGCGAGCTAGAGGAGCGTGATGGGGTACAATATGCACCTTCGCA
AGTCGCAGCAATTGAGTGCGCTTTGCAAAATGCGGTAATGATTTTAACAGGTGGACCGGGTACAGGTAAAACGACTGTTG
TGAAAGGGCTTGTAGAAGTATATGCAGAGCTACACGGCCTGTCGCTTGACCCAAAAACATATGCTAAAAAAGAAGAGCCA
TTTCCTATTATATTAGTAGCACCGACAGGACGAGCCGCCAAGCGTTTGGCTGAATCTACCAGCTTACCTGCAATGACAAT
TCATCGTTTATTAGGATTCACAGGTCAGGAAAAAGAAGAAGAAACAGAGCGTGAAATCACAGGACGTCTTGTCATTGTAG
ATGAAATGTCAATGGTCGATACATGGCTTGCGCACCAGCTACTCAAAAGCTTAGCAAAAGATGTCCAAGTGGTTTTTGTT
GGTGACCAAGACCAGTTACCGCCAGTTGGACCGGGGCAAGTATTGAAGGACTTATTAACATCAAAGCAAGTGCCAACTGT
GGAATTAACAGATGTTTACAGGCAAGCAGAGGGCTCAACGATTATTGATATTGCCCATCAAATTAAGCAAGGTACAGTTC
CGCCTACAATAACTCAAAAAACAGCAGACCGCTCCTTTATCCAAGCATCGACTGGGCAAATTGTGAGCGTTGTCACACAA
ATTGTCAAAAGTGCAACGGCAAAGGGTCAGGCGATACGTGATATTCAAGTGTTAGCACCAATGTACAAGGGACCAGCAGG
CATTGATGCATTAAATAAGCAAATTCAAGAGCTTGTTAACCCGAATGACGGCACGCGTAAGGAGTTAGCATTTGGCGATA
CCGTTTATCGCATTGGTGATAAGGTGCTACAGCTTGTCAATCAACCAGATAGCAACGTATTCAATGGTGATATGGGGGAG
GTTGTTGCGATAATAAAGGCAAAAGAAACGGTGGAAAAGCAAGATTTGCTCGTTGTCTCATATGACGGGATTGAAGTAAC
GTATCAGCGCGGTGACTTAAATCAAATAACATTAGCATACTGCTGCTCCATTCATAAATCACAAGGCTCTGAATTCCAAA
CGGTTATTATGCCAATTGTACGCGGTTACTCGAAAATGCTGCGTCGCAATTTATTGTATACAGGGATTACGCGAGCAAAA
AACTTTTTAATTTTGTGCGGAGAGCCAGATGTGTTAGCACAGGGCTTAATGAAAACGGATGATTTACAGCGTTTTACAAG
CCTGACTGCCCGATTAAATCCAATGGATGAAGAAATTGTTGAAGTAATTGCTGAAGCACAAGAAAGCTATACAACATCTA
CGCCACCTATTTTAAATGCAGAAACAGCTCCCTATATTCATCCGTTGATTGGTATGGAGGGCATCGCACCATCAGATTTT
ATGAAATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-651)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.015

99.252

0.526

Multiple sequence alignment