Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHI16_RS08095 Genome accession   NZ_CP152044
Coordinates   1607251..1608030 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0923     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602251..1613030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI16_RS08075 (MHI16_08075) trmFO 1602955..1604259 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI16_RS08080 (MHI16_08080) xerC 1604322..1605239 (+) 918 WP_058013999.1 tyrosine recombinase XerC -
  MHI16_RS08085 (MHI16_08085) hslV 1605254..1605799 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  MHI16_RS08090 (MHI16_08090) hslU 1605816..1607216 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  MHI16_RS08095 (MHI16_08095) codY 1607251..1608030 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHI16_RS08100 (MHI16_08100) flgB 1608317..1608706 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MHI16_RS08105 (MHI16_08105) flgC 1608706..1609158 (+) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  MHI16_RS08110 (MHI16_08110) fliE 1609170..1609487 (+) 318 WP_058013997.1 flagellar hook-basal body complex protein FliE -
  MHI16_RS08115 (MHI16_08115) fliF 1609537..1611129 (+) 1593 WP_058013996.1 flagellar basal-body MS-ring/collar protein FliF -
  MHI16_RS08120 (MHI16_08120) fliG 1611141..1612157 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  MHI16_RS08125 (MHI16_08125) fliH 1612150..1612914 (+) 765 WP_058013995.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=986603 MHI16_RS08095 WP_003210838.1 1607251..1608030(+) (codY) [Bacillus sp. FSL K6-0923]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=986603 MHI16_RS08095 WP_003210838.1 1607251..1608030(+) (codY) [Bacillus sp. FSL K6-0923]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAATTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment