Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE62_RS08235 Genome accession   NZ_CP152037
Coordinates   1659065..1659844 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. FSL K6-2861     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654065..1664844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS08215 (NYE62_08215) trmFO 1654752..1656059 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE62_RS08220 (NYE62_08220) xerC 1656129..1657046 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYE62_RS08225 (NYE62_08225) hslV 1657062..1657607 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NYE62_RS08230 (NYE62_08230) hslU 1657615..1659027 (+) 1413 WP_257008574.1 HslU--HslV peptidase ATPase subunit -
  NYE62_RS08235 (NYE62_08235) codY 1659065..1659844 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE62_RS08240 (NYE62_08240) flgB 1660198..1660587 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYE62_RS08245 (NYE62_08245) flgC 1660587..1661039 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NYE62_RS08250 (NYE62_08250) fliE 1661050..1661370 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NYE62_RS08255 (NYE62_08255) fliF 1661413..1663023 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE62_RS08260 (NYE62_08260) fliG 1663036..1664052 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYE62_RS08265 (NYE62_08265) fliH 1664045..1664800 (+) 756 WP_060675466.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=986206 NYE62_RS08235 WP_003154263.1 1659065..1659844(+) (codY) [Bacillus sp. FSL K6-2861]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=986206 NYE62_RS08235 WP_003154263.1 1659065..1659844(+) (codY) [Bacillus sp. FSL K6-2861]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGAATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment