Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHI58_RS08145 Genome accession   NZ_CP152035
Coordinates   1594276..1595055 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2869     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589276..1600055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI58_RS08125 (MHI58_08125) trmFO 1589980..1591284 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI58_RS08130 (MHI58_08130) xerC 1591347..1592264 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  MHI58_RS08135 (MHI58_08135) hslV 1592279..1592824 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  MHI58_RS08140 (MHI58_08140) hslU 1592841..1594241 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  MHI58_RS08145 (MHI58_08145) codY 1594276..1595055 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHI58_RS08150 (MHI58_08150) flgB 1595346..1595735 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  MHI58_RS08155 (MHI58_08155) flgC 1595735..1596187 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  MHI58_RS08160 (MHI58_08160) fliE 1596199..1596516 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  MHI58_RS08165 (MHI58_08165) fliF 1596567..1598159 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  MHI58_RS08170 (MHI58_08170) fliG 1598171..1599187 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  MHI58_RS08175 (MHI58_08175) fliH 1599180..1599944 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=986063 MHI58_RS08145 WP_041108981.1 1594276..1595055(+) (codY) [Bacillus sp. FSL K6-2869]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=986063 MHI58_RS08145 WP_041108981.1 1594276..1595055(+) (codY) [Bacillus sp. FSL K6-2869]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment