Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHB83_RS05140 Genome accession   NZ_CP152034
Coordinates   1000472..1000762 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3149     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 995472..1005762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS05100 (MHB83_05100) - 995507..995836 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  MHB83_RS05105 (MHB83_05105) - 995849..996289 (+) 441 WP_044140388.1 DUF327 family protein -
  MHB83_RS05110 (MHB83_05110) holB 996301..997290 (+) 990 WP_342496706.1 DNA polymerase III subunit delta' -
  MHB83_RS05115 (MHB83_05115) - 997293..998120 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  MHB83_RS05120 (MHB83_05120) yabA 998135..998488 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  MHB83_RS05125 (MHB83_05125) - 998544..999287 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MHB83_RS05130 (MHB83_05130) - 999274..999570 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  MHB83_RS05135 (MHB83_05135) rsmI 999548..1000426 (+) 879 WP_003217903.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MHB83_RS05140 (MHB83_05140) abrB 1000472..1000762 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHB83_RS05145 (MHB83_05145) metG 1001281..1003281 (+) 2001 WP_340901033.1 methionine--tRNA ligase -
  MHB83_RS05150 (MHB83_05150) - 1003363..1004130 (+) 768 WP_050945797.1 TatD family hydrolase -
  MHB83_RS05155 (MHB83_05155) - 1004375..1005577 (+) 1203 WP_050945796.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=985993 MHB83_RS05140 WP_087975202.1 1000472..1000762(-) (abrB) [Bacillus sp. FSL K6-3149]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=985993 MHB83_RS05140 WP_087975202.1 1000472..1000762(-) (abrB) [Bacillus sp. FSL K6-3149]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment