Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHH61_RS17085 Genome accession   NZ_CP152033
Coordinates   3308463..3309242 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL K6-3154     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3303463..3314242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS17065 (MHH61_17050) trmFO 3304167..3305471 (+) 1305 WP_125586800.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH61_RS17070 (MHH61_17055) xerC 3305534..3306451 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  MHH61_RS17075 (MHH61_17060) hslV 3306466..3307011 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  MHH61_RS17080 (MHH61_17065) hslU 3307028..3308428 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  MHH61_RS17085 (MHH61_17070) codY 3308463..3309242 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHH61_RS17090 (MHH61_17075) flgB 3309531..3309920 (+) 390 WP_206427965.1 flagellar basal body rod protein FlgB -
  MHH61_RS17095 (MHH61_17080) flgC 3309920..3310372 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  MHH61_RS17100 (MHH61_17085) fliE 3310438..3310701 (+) 264 WP_231506888.1 flagellar hook-basal body complex protein FliE -
  MHH61_RS17105 (MHH61_17090) fliF 3310751..3312343 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  MHH61_RS17110 (MHH61_17095) fliG 3312355..3313371 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  MHH61_RS17115 (MHH61_17100) fliH 3313364..3314128 (+) 765 WP_125586796.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=985972 MHH61_RS17085 WP_007499612.1 3308463..3309242(+) (codY) [Bacillus sp. FSL K6-3154]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=985972 MHH61_RS17085 WP_007499612.1 3308463..3309242(+) (codY) [Bacillus sp. FSL K6-3154]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment