Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACOAKG_RS15535 Genome accession   NZ_CP184261
Coordinates   3501478..3503727 (-) Length   749 a.a.
NCBI ID   WP_420076407.1    Uniprot ID   -
Organism   Streptomyces sp. JL3001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3496478..3508727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS15520 (ACOAKG_15520) - 3496799..3497038 (+) 240 WP_030955126.1 heavy-metal-associated domain-containing protein -
  ACOAKG_RS15525 (ACOAKG_15525) - 3497047..3499344 (+) 2298 WP_388086980.1 heavy metal translocating P-type ATPase -
  ACOAKG_RS15530 (ACOAKG_15530) - 3499922..3501211 (-) 1290 WP_126899815.1 citrate synthase -
  ACOAKG_RS15535 (ACOAKG_15535) recD/recD2/recDB 3501478..3503727 (-) 2250 WP_420076407.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACOAKG_RS15540 (ACOAKG_15540) - 3503780..3504370 (-) 591 WP_330354325.1 TetR/AcrR family transcriptional regulator -
  ACOAKG_RS15545 (ACOAKG_15545) - 3504487..3505050 (+) 564 WP_420076408.1 hypothetical protein -
  ACOAKG_RS15550 (ACOAKG_15550) - 3505211..3506230 (+) 1020 WP_150502468.1 LacI family DNA-binding transcriptional regulator -
  ACOAKG_RS15555 (ACOAKG_15555) - 3506227..3507759 (+) 1533 WP_401493319.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 80969.67 Da        Isoelectric Point: 6.6508

>NTDB_id=985725 ACOAKG_RS15535 WP_420076407.1 3501478..3503727(-) (recD/recD2/recDB) [Streptomyces sp. JL3001]
MSSQAGSGERRLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTLLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLKIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASIAVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQGN
CYLPEEQLIADAVKLLQVDTGLVIECLAELAQIPEDGSDPGVVREKVPGPDGRAEPVTAVYLVPFHRAELSVAAQLLRLL
RTDEDRMPGFHDVAWDKALGWLKGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKKARVVLAAP
TGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLQADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLP
SVGAGEVLRDLLADGSPIPAVRLTRVFRQAQQSGVVTNAHRINAGQHPLTDGMKDFFLFVEDETEEAGRLTVDVAARRIP
AKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAITPGRPELPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVV
TSLDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKQLVVLV
GSRKAIGQAVRTVSAGRRCTALDFRLAGS

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=985725 ACOAKG_RS15535 WP_420076407.1 3501478..3503727(-) (recD/recD2/recDB) [Streptomyces sp. JL3001]
ATGTCCAGTCAGGCGGGGAGCGGCGAGCGGCGACTTGCGGTGCTCGAAGGTGTCCTGGAGCGGATCACGTACGCCAACGA
GGAGAACGGCTACACGGTCGCCCGGGTCGACACCGGAAGAGGCGGGGGCGATCTGCTCACCGTCGTCGGCGCACTGCTCG
GCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGGCGTTGGGGGTCCCACCCGCAATACGGGAAGCAGTTCACCGTCGAG
AACTACACGACACTGCTCCCGGCCACCGTCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGGTCAAGGGCATCGGGCC
GGTCTTCGCCGACCGCATCACCCAGCACTTCGGGCTGGACACCCTGAAGATCATCGAGGAGGAGCCCAAGCGGCTCATCG
AGGTCCCCGGACTCGGCCCCAAGCGCACGAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCCGTGCGGATCTACAAGAAGTACGGCGACGCCTCCATCGCCGT
CGTGAAGAACCAGCCCTACCGGCTCGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCAGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCGGAGCGAGTGAAAGCGGGCTTGCAGTACGCCCTGTCGCAGGCCACCGACCAGGGCAAC
TGCTACCTCCCCGAGGAACAGCTGATCGCCGACGCGGTCAAGCTCCTCCAGGTCGACACCGGGCTCGTCATCGAGTGCCT
CGCCGAGCTCGCGCAGATCCCCGAGGACGGCTCCGACCCGGGAGTCGTACGGGAGAAGGTGCCCGGCCCCGACGGCCGCG
CGGAGCCCGTGACGGCCGTCTATCTCGTCCCCTTCCACCGGGCCGAACTCTCCGTTGCCGCCCAGCTGTTGCGGCTGCTG
CGCACCGACGAGGACCGGATGCCGGGGTTCCATGACGTCGCCTGGGACAAGGCGCTGGGCTGGCTGAAGGGCCGTACGGG
CGCGGAACTCGCCCCCGAGCAGGAGGCCGCCGTCAGGCTGGCCCTGACCGAGAAGGTCGCCGTGCTGACCGGTGGTCCCG
GCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTCGAGCTGGCCCGGGCGAAGAAGGCACGCGTCGTCCTCGCCGCCCCC
ACCGGCCGCGCCGCCAAGCGCCTCGCCGAACTCACCGGCGCCGAGGCCTCCACCGTCCACCGCCTGCTGGAGCTCAAGCC
CGGCGGCGACGCGGCCTACGACAGGGACCGCCCGCTCCAGGCCGACCTGGTGGTGGTCGACGAGGCGTCCATGCTGGACC
TGTTGCTCGCCAACAAGCTGGTGAAGGCCGTGCCACCGGGCGCCCACCTGCTGTTCGTCGGGGACGTGGACCAGTTGCCG
AGCGTCGGCGCGGGCGAGGTGCTCAGGGACCTCCTCGCCGACGGCAGCCCGATCCCCGCCGTGCGTCTCACCCGTGTGTT
CCGGCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACGCCGGACAGCACCCCCTCACCGACGGCATGA
AGGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGAGGCCGGCCGGCTCACCGTGGATGTGGCGGCTCGTCGGATTCCG
GCCAAGTTCGGGCTCGACCCGCGCCGGGACGTCCAGGTGCTGGCCCCCATGCACCGCGGCCCGGCCGGCGCCGGAACGCT
GAACGGCCTGCTCCAGCAGGCCATCACACCCGGACGCCCCGAGCTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGCG
TCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGGGAGAACGGTGTCTTCAACGGCACCGTGGGCGTGGTC
ACCTCGCTCGACCCGGTCGACCAGCGCCTGACAGTGCTGACGGACGAGGACGAGGAGGTTCCGTACGAATTCGACGAACT
GGACGAACTCGCGCATGCGTACGCGGTGACGATCCACCGTTCACAGGGAAGTGAATATCCCGCAGTGGTGATCCCCGTCA
CGACGGGAGCATGGATGATGCTTCAGCGGAACCTGCTCTACACGGCGGTCACCAGGGCAAAGCAGTTGGTCGTCCTCGTG
GGTTCGCGCAAGGCCATCGGTCAGGCGGTGCGCACGGTCTCGGCCGGGCGCCGCTGCACGGCACTCGACTTCCGGCTCGC
GGGCTCCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

Helix-hairpin-helix domain (HHH_5)

(102-151)

AAA domain (AAA_30)

(349-528)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.874

100

0.364

Multiple sequence alignment