Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHI34_RS14745 Genome accession   NZ_CP152028
Coordinates   3021439..3023871 (+) Length   810 a.a.
NCBI ID   WP_058844063.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL L8-0126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3016439..3028871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI34_RS14720 (MHI34_14720) - 3016903..3018345 (+) 1443 WP_101966500.1 MDR family MFS transporter -
  MHI34_RS14725 (MHI34_14725) - 3018489..3019211 (-) 723 WP_036124348.1 GTP pyrophosphokinase family protein -
  MHI34_RS14730 (MHI34_14730) - 3019228..3020067 (-) 840 WP_342503578.1 hypothetical protein -
  MHI34_RS14735 (MHI34_14735) - 3020198..3020485 (-) 288 WP_342503579.1 hypothetical protein -
  MHI34_RS14740 (MHI34_14740) hisA 3020482..3021249 (-) 768 WP_271910490.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MHI34_RS14745 (MHI34_14745) recD2 3021439..3023871 (+) 2433 WP_058844063.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHI34_RS14750 (MHI34_14750) hpaB 3024009..3025442 (+) 1434 WP_036124339.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  MHI34_RS14755 (MHI34_14755) - 3025912..3026877 (+) 966 WP_036124338.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90794.12 Da        Isoelectric Point: 4.9167

>NTDB_id=985693 MHI34_RS14745 WP_058844063.1 3021439..3023871(+) (recD2) [Lysinibacillus sp. FSL L8-0126]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSTEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKDMLQQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKIVSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPNDLTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGTAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDINEEIVEVEAMSIEEQELNNPVSIAQKLTVETAPYIHPMIGMN
DISPYDFLND

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=985693 MHI34_RS14745 WP_058844063.1 3021439..3023871(+) (recD2) [Lysinibacillus sp. FSL L8-0126]
ATGACCGATCATCTAGATTTATTTGAACTCAATAAATTCTTTATACTCGGACGTCCAATCGTCTCTATCTTTCATAATGC
ACAAAATATGTATTCGATTGTACGTGTGAAAATACAAGAGACGAACTTACAATATGAAGATAAAGAAATTATCGTTGTTG
GTTATTTTCCACCATTACAAATGGATGAACAATATCGTTTTACGGGTATCTTAAAACAGCATCCTAAATATGGTGCTCAA
TTTCAAATCGAGACATTTACGAAAGAGGTTCCTGCAACTGAGCAAGGGATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATTGGGAAAAAAACGGCTGAAACGATTGTAGAAAAACTAGGGGCTAATGCTCTTCGTGTTATTTTAGAAGATCCTA
GTGCACTTGACGCCGTTCCACGCTTATCCACTGAAAAAAAAGAAGTTATTCATCGCACCATCGAACAAAATCTAGGCCTA
GAACGTGTGATGATTCAACTGAATGAGTGGGGCTTTGGTCCACAGCTCGGTATGAAAATCTATCAAACCTATCGAACTGA
AGCCATAGAATTACTAACTGAAAATCCATATCGCTTGATCGAAGATGTTGAAGGCGTTGGTTTCTTTCGGGCTGACGAAT
TAGGGGCTAAACTAGGAATTACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATATTTCATGTGTTAAATACAGCTGCT
TTATCAGATGGACACGTCTATTTAGATGCGGAGCATGTCCTACCGCTTGTAAAGGATATGCTTCAACAAAGTCAGCGGCA
GGAGATCCCGTTTGAGGACATTTCTAAAGCCTGTATTGAGCTACGTGAAGAAGGTAAAATTTGTGGTGAAGAAACTAGAT
TATATTTACCATCCCTTTATTTTTCTGAAGTAGGGATTGCCTCTAAAATCGTATCGCTCATTGAGCGAAATAATAAGGCT
GAGCATTTTAGTAAGGACGAAATTAGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTCACCTACGCTGAGACACA
AGCAAATGCTATTGAACAGGCTTTAAATTCAGCCGTCATGATTTTGACAGGTGGACCGGGTACTGGAAAAACAACGGTTG
TACGTGGAGTGGTTGAAGTTTATGCAAAGCTACATGGTTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAAGAACCA
TTTCCTATCATCCTTTGTGCACCAACTGGACGTGCTGCCAAGCGGTTAGCTGAATCAACTGAGCTTCCTGCAATGACCAT
TCATCGTCTACTTGGCTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAGGTAACAGGAAAGCTCATCATTGTGG
ATGAAATGTCTATGGTGGATACATGGCTTGCCCATCAGTTATTAAAAGCTTTACATGAAGATGTCCAGGTTGTTTTTGTA
GGGGACCAGGACCAGCTTCCACCAGTAGGGCCAGGACAGGTGTTAAAGGATTTATTAGCATCAAAGCAACTGCCAACTGT
TGAACTAACAGATGTTTATCGACAAGCAGAGGGCTCTACAATTATTGAGCTTGCCCATCAAATTAAAAAGGGAACGATTC
CAAATGATTTAACAGCTAAAACATCTGATCGTTCGTTTATAAAGGCTTCAGCCGATCAAGTTGCCAATGTTGTCACGCAG
GTTGTCAAAAGTGCAGTAGCCAAAGGACAGGAAATTCGCAATATTCAGGTGCTAGCACCCATGTATAAAGGTACGGCTGG
TATTGATAATTTAAATAAAATGATTCAAGAGCTCATTAATCCAAATGATACGGGAACAAGAAAAGAGCTGGTCTTTGGTG
ATGTGACTTATCGCATAAAAGATAAAGTACTTCAGTTGGTCAATCAACCTGAGAGCAATGTTTTTAACGGAGATATGGGC
GAGGTCATCAGTATTATTAAAGCAAAAGAAACGATCGAAAAACAGGACTTACTGATCGTATCCTTTGATGGTATCGAGGT
AACTTATCAACGCAGTGATTTGAACCAATTGACACTAGCCTATTGCTGCTCTATTCATAAATCTCAAGGCTCTGAGTTTC
AAACAGTTATTATGCCAGTTGTCAGAGGATATTCAAAAATGCTGCGGCGTAATCTCTTATACACAGGGATTACTCGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCCGATGTACTTGCAGATGGCTTACAGCGTACAGATGACCTACAGCGTTTCAC
TTCTTTACGTGCAAGACTTAATCCGATGGATATCAATGAAGAAATTGTGGAAGTGGAGGCTATGTCAATAGAGGAGCAGG
AGTTGAACAATCCCGTCTCCATAGCACAAAAGCTAACAGTAGAAACAGCACCATATATTCATCCAATGATTGGGATGAAT
GATATCTCCCCTTATGATTTTTTAAATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.27

100

0.526

Multiple sequence alignment