Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHI23_RS07900 Genome accession   NZ_CP152024
Coordinates   1557336..1558115 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL M7-0003     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552336..1563115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI23_RS07880 (MHI23_07880) trmFO 1553040..1554344 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI23_RS07885 (MHI23_07885) xerC 1554407..1555324 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  MHI23_RS07890 (MHI23_07890) hslV 1555339..1555884 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  MHI23_RS07895 (MHI23_07895) hslU 1555901..1557301 (+) 1401 WP_342492426.1 HslU--HslV peptidase ATPase subunit -
  MHI23_RS07900 (MHI23_07900) codY 1557336..1558115 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHI23_RS07905 (MHI23_07905) flgB 1558404..1558793 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MHI23_RS07910 (MHI23_07910) flgC 1558793..1559245 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  MHI23_RS07915 (MHI23_07915) fliE 1559257..1559574 (+) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  MHI23_RS07920 (MHI23_07920) fliF 1559624..1561216 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  MHI23_RS07925 (MHI23_07925) fliG 1561228..1562244 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  MHI23_RS07930 (MHI23_07930) fliH 1562237..1563001 (+) 765 WP_342492427.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=985446 MHI23_RS07900 WP_007499612.1 1557336..1558115(+) (codY) [Bacillus sp. FSL M7-0003]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=985446 MHI23_RS07900 WP_007499612.1 1557336..1558115(+) (codY) [Bacillus sp. FSL M7-0003]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment