Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKY09_RS07745 Genome accession   NZ_CP152020
Coordinates   1589802..1592246 (+) Length   814 a.a.
NCBI ID   WP_342568010.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584802..1597246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS07725 (MKY09_07725) - 1586400..1586822 (+) 423 WP_169358018.1 Rrf2 family transcriptional regulator -
  MKY09_RS07730 (MKY09_07730) - 1586840..1587973 (+) 1134 WP_298470372.1 cysteine desulfurase family protein -
  MKY09_RS07735 (MKY09_07735) mnmA 1587992..1589107 (+) 1116 WP_298470374.1 tRNA 2-thiouridine(34) synthase MnmA -
  MKY09_RS07740 (MKY09_07740) - 1589122..1589781 (+) 660 WP_169358021.1 tetratricopeptide repeat protein -
  MKY09_RS07745 (MKY09_07745) recD2 1589802..1592246 (+) 2445 WP_342568010.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKY09_RS07750 (MKY09_07750) alaS 1592586..1595219 (+) 2634 WP_342568011.1 alanine--tRNA ligase -
  MKY09_RS07755 (MKY09_07755) - 1595296..1595562 (+) 267 WP_053588802.1 IreB family regulatory phosphoprotein -
  MKY09_RS07760 (MKY09_07760) ruvX 1595565..1595984 (+) 420 WP_169358024.1 Holliday junction resolvase RuvX -
  MKY09_RS07765 (MKY09_07765) - 1595996..1596289 (+) 294 WP_251555603.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 814 a.a.        Molecular weight: 91284.60 Da        Isoelectric Point: 5.1900

>NTDB_id=985238 MKY09_RS07745 WP_342568010.1 1589802..1592246(+) (recD2) [Psychrobacillus sp. FSL K6-4046]
MTNEINNEKQFISGRPIVSIFHNPQNLFSIIKLKIKSTNTTYTDKEIIVTGYFPQLVLEEAYKFTGVIKNHPKYGIQFQV
ETFQKEVPATETGIVHYLSSDMFPGIGRKTAELIVKKLGENAINRILDDPASLDIIPKLGEDKKQTIRATLEQNLGLEKV
MIQLNEWGFGPQVAMKIYQAYREETIAKLTENPYRLIEDVEGVGFVRADELGYKLGIKGNHPDRIKAAIYHLLQTSSLSE
GHVFQYAEQLLEDVKRMLENAQREEISYESITQCCIELAEESRIVGEVNKFYIPSLYFSEVGISSKVETLLMDKDIHQFP
LKEIKKHLGPLEKRLGVKYANTQIKAIETALNSNITLLTGGPGTGKTTVVRGIVELYSELHGLSLDPKEWAKEQKPFPIV
LAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEDTDTEGKEIEGRLVIIDETSMLDTWLGHQLLKAIPKDAQVIFVGDQD
QLPPVGPGQVLKDLLASKRIPTVELVDIYRQSEGSSIIELAHEMKQGSVPATLTAKTKDRSFIKATTEQIPKVVEQVLKA
ALSKGQSIREIQVLAPMYRGPAGIDALNKMIQEMVNPNTDGTRKEMTFGDTIYRIGDKVLQLVNQPESNVFNGDMGEVVA
IFRANETVEKKEMLVVSFDGNEVTYEKNDLNQITLAYCCSVHKSQGSEFQTVIMPVTRSYMKMLRRNLLYTGITRAKNFL
ILCGDPEVFKFGVERTDDLQRLTTLKERLADEVKEEIETKSTSSVSTEKSSTEVTLSVEADEVDSTYLSADNYHLIDPLI
GMKGITPYEFLDTD

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=985238 MKY09_RS07745 WP_342568010.1 1589802..1592246(+) (recD2) [Psychrobacillus sp. FSL K6-4046]
ATGACAAATGAAATAAATAACGAAAAACAATTTATATCAGGTCGACCAATCGTCTCTATCTTTCATAATCCACAAAATCT
ATTCTCCATTATTAAACTAAAGATAAAATCCACTAATACTACATACACAGATAAAGAAATAATTGTTACAGGTTATTTCC
CCCAGTTAGTTTTAGAAGAAGCGTATAAATTTACAGGTGTTATTAAAAATCACCCAAAGTATGGGATACAGTTTCAAGTC
GAAACGTTCCAAAAGGAGGTCCCAGCAACAGAGACAGGGATTGTTCATTATCTATCTAGTGATATGTTTCCTGGGATAGG
TAGGAAGACAGCGGAGCTTATTGTTAAAAAACTAGGAGAAAATGCGATTAATCGAATTTTAGATGATCCAGCGTCTCTAG
ATATTATTCCAAAGCTAGGTGAAGATAAAAAACAAACTATTAGAGCCACATTAGAACAAAATTTAGGATTAGAAAAAGTG
ATGATTCAGTTAAACGAGTGGGGTTTTGGTCCCCAAGTTGCCATGAAAATCTATCAGGCATATAGAGAAGAAACAATTGC
TAAGTTAACAGAAAACCCATATCGTTTAATAGAAGATGTAGAGGGGGTTGGTTTTGTACGTGCCGACGAGTTAGGTTATA
AGCTCGGGATAAAAGGAAATCATCCGGATCGTATAAAAGCAGCGATATACCATTTACTTCAAACTTCTTCACTTAGTGAG
GGTCATGTCTTTCAATATGCTGAGCAGCTTTTAGAAGACGTTAAAAGAATGCTTGAAAATGCACAAAGAGAAGAAATCTC
TTACGAGTCAATAACACAATGTTGTATAGAGCTAGCTGAGGAAAGTAGGATTGTTGGTGAGGTAAATAAATTTTATATCC
CATCTCTATACTTTTCAGAGGTAGGAATCAGCTCCAAGGTAGAAACTTTACTAATGGATAAAGATATTCACCAATTTCCT
TTAAAAGAAATTAAGAAGCATTTAGGTCCTTTAGAAAAGCGTCTTGGCGTTAAATATGCCAATACACAAATCAAGGCTAT
TGAAACAGCTCTTAATTCGAATATTACCTTATTAACGGGAGGACCTGGGACGGGAAAAACAACCGTTGTACGAGGAATTG
TAGAACTATACTCTGAACTGCACGGGCTGTCCTTAGATCCAAAGGAATGGGCGAAGGAGCAAAAGCCCTTTCCAATTGTT
CTGGCTGCACCTACCGGTAGAGCAGCTAAGCGATTAAGTGAATCTACAGATCTGCCTGCAATGACCATTCATAGATTACT
TGGCTTTAATGGCCAAGAGGACACCGATACAGAAGGTAAAGAAATTGAAGGAAGGCTAGTTATTATTGATGAGACCTCTA
TGCTAGATACTTGGCTAGGTCATCAGCTTTTAAAAGCTATCCCTAAGGATGCTCAGGTTATTTTTGTTGGTGACCAAGAC
CAGCTCCCGCCTGTTGGTCCAGGTCAGGTATTAAAGGACTTACTGGCATCTAAAAGAATTCCAACAGTAGAACTGGTTGA
TATTTATCGACAATCAGAGGGATCCTCCATTATAGAATTAGCACATGAAATGAAACAAGGAAGTGTACCTGCTACACTTA
CCGCTAAAACAAAAGATCGATCCTTTATCAAGGCAACGACTGAACAAATCCCTAAAGTAGTAGAACAAGTGTTAAAGGCG
GCATTGTCTAAAGGTCAATCCATTCGAGAGATACAAGTGCTAGCTCCTATGTATAGAGGGCCTGCTGGAATAGATGCGTT
AAATAAAATGATTCAAGAGATGGTCAATCCGAATACCGATGGAACACGTAAGGAAATGACCTTTGGAGATACAATTTATC
GGATAGGCGATAAAGTACTTCAGCTAGTAAATCAACCGGAAAGTAACGTTTTTAATGGTGATATGGGGGAAGTTGTTGCT
ATTTTTAGAGCCAATGAAACGGTTGAGAAGAAAGAGATGCTTGTTGTCTCTTTTGATGGCAATGAAGTTACGTATGAAAA
GAATGACTTAAATCAAATTACTCTAGCGTATTGTTGCTCCGTTCATAAATCACAGGGTAGTGAGTTCCAAACAGTCATTA
TGCCTGTTACGAGAAGCTATATGAAAATGCTTAGACGTAACTTGCTTTACACTGGAATTACTCGTGCTAAAAATTTCTTA
ATTCTTTGTGGAGATCCAGAGGTATTTAAATTTGGCGTTGAACGAACAGATGACTTGCAGCGTTTAACTACATTAAAAGA
ACGTTTAGCAGATGAAGTAAAAGAAGAAATAGAGACAAAATCTACATCATCTGTATCTACAGAAAAAAGTAGTACTGAAG
TGACGTTGTCTGTTGAGGCGGATGAAGTGGACTCAACATATTTGTCAGCAGATAATTATCATTTAATCGATCCTCTTATA
GGTATGAAGGGTATTACCCCATATGAGTTCTTAGATACCGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-244)

AAA domain (AAA_30)

(339-547)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-723)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.332

99.263

0.539

Multiple sequence alignment