Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKY83_RS08315 Genome accession   NZ_CP152015
Coordinates   1654333..1655112 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0266     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649333..1660112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY83_RS08295 (MKY83_08295) trmFO 1650037..1651341 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKY83_RS08300 (MKY83_08300) xerC 1651404..1652321 (+) 918 WP_106067464.1 tyrosine recombinase XerC -
  MKY83_RS08305 (MKY83_08305) hslV 1652336..1652881 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  MKY83_RS08310 (MKY83_08310) hslU 1652898..1654298 (+) 1401 WP_106067465.1 HslU--HslV peptidase ATPase subunit -
  MKY83_RS08315 (MKY83_08315) codY 1654333..1655112 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKY83_RS08320 (MKY83_08320) flgB 1655399..1655788 (+) 390 WP_342488499.1 flagellar basal body rod protein FlgB -
  MKY83_RS08325 (MKY83_08325) flgC 1655788..1656240 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  MKY83_RS08330 (MKY83_08330) fliE 1656252..1656569 (+) 318 WP_065097275.1 flagellar hook-basal body complex protein FliE -
  MKY83_RS08335 (MKY83_08335) fliF 1656619..1658211 (+) 1593 WP_065097276.1 flagellar basal-body MS-ring/collar protein FliF -
  MKY83_RS08340 (MKY83_08340) fliG 1658223..1659239 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  MKY83_RS08345 (MKY83_08345) fliH 1659232..1659996 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=985026 MKY83_RS08315 WP_003210838.1 1654333..1655112(+) (codY) [Bacillus sp. FSL M8-0266]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=985026 MKY83_RS08315 WP_003210838.1 1654333..1655112(+) (codY) [Bacillus sp. FSL M8-0266]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAGGAAAT
GGCAGAAACTTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment