Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKX52_RS07655 Genome accession   NZ_CP152014
Coordinates   1522900..1523679 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus sp. FSL R5-0422     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517900..1528679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS07635 (MKX52_07635) trmFO 1518604..1519908 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKX52_RS07640 (MKX52_07640) xerC 1519971..1520888 (+) 918 WP_012009949.1 tyrosine recombinase XerC -
  MKX52_RS07645 (MKX52_07645) hslV 1520903..1521448 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  MKX52_RS07650 (MKX52_07650) hslU 1521465..1522865 (+) 1401 WP_012009950.1 HslU--HslV peptidase ATPase subunit -
  MKX52_RS07655 (MKX52_07655) codY 1522900..1523679 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKX52_RS07660 (MKX52_07660) flgB 1523966..1524355 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MKX52_RS07665 (MKX52_07665) flgC 1524355..1524807 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  MKX52_RS07670 (MKX52_07670) fliE 1524819..1525136 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  MKX52_RS07675 (MKX52_07675) fliF 1525186..1526778 (+) 1593 WP_342491746.1 flagellar basal-body MS-ring/collar protein FliF -
  MKX52_RS07680 (MKX52_07680) fliG 1526790..1527806 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  MKX52_RS07685 (MKX52_07685) fliH 1527799..1528563 (+) 765 WP_342491747.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=984965 MKX52_RS07655 WP_012009951.1 1522900..1523679(+) (codY) [Bacillus sp. FSL R5-0422]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=984965 MKX52_RS07655 WP_012009951.1 1522900..1523679(+) (codY) [Bacillus sp. FSL R5-0422]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACGATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATTCTGTCTCGTTTGCAAGATA
CATTTAAAGACGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATTGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCAATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCACGCTCTCTTGGAATGAAGGGAACA
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment