Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE28_RS08435 Genome accession   NZ_CP152013
Coordinates   1670380..1671159 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. FSL R5-0443     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665380..1676159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS08415 (NYE28_08415) trmFO 1666067..1667374 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE28_RS08420 (NYE28_08420) xerC 1667444..1668361 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  NYE28_RS08425 (NYE28_08425) hslV 1668377..1668922 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  NYE28_RS08430 (NYE28_08430) hslU 1668930..1670342 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  NYE28_RS08435 (NYE28_08435) codY 1670380..1671159 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE28_RS08440 (NYE28_08440) flgB 1671513..1671902 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYE28_RS08445 (NYE28_08445) flgC 1671902..1672354 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  NYE28_RS08450 (NYE28_08450) fliE 1672365..1672685 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NYE28_RS08455 (NYE28_08455) fliF 1672728..1674338 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE28_RS08460 (NYE28_08460) fliG 1674351..1675367 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYE28_RS08465 (NYE28_08465) fliH 1675360..1676115 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=984896 NYE28_RS08435 WP_003154263.1 1670380..1671159(+) (codY) [Bacillus sp. FSL R5-0443]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=984896 NYE28_RS08435 WP_003154263.1 1670380..1671159(+) (codY) [Bacillus sp. FSL R5-0443]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment