Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE68_RS08900 Genome accession   NZ_CP152012
Coordinates   1747224..1748003 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. FSL R5-0447     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742224..1753003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS08880 (NYE68_08880) trmFO 1742911..1744218 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE68_RS08885 (NYE68_08885) xerC 1744288..1745205 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYE68_RS08890 (NYE68_08890) hslV 1745221..1745766 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  NYE68_RS08895 (NYE68_08895) hslU 1745774..1747186 (+) 1413 WP_324636970.1 HslU--HslV peptidase ATPase subunit -
  NYE68_RS08900 (NYE68_08900) codY 1747224..1748003 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE68_RS08905 (NYE68_08905) flgB 1748357..1748746 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYE68_RS08910 (NYE68_08910) flgC 1748746..1749198 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NYE68_RS08915 (NYE68_08915) fliE 1749209..1749529 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NYE68_RS08920 (NYE68_08920) fliF 1749572..1751182 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE68_RS08925 (NYE68_08925) fliG 1751195..1752211 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYE68_RS08930 (NYE68_08930) fliH 1752204..1752959 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=984820 NYE68_RS08900 WP_003154263.1 1747224..1748003(+) (codY) [Bacillus sp. FSL R5-0447]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=984820 NYE68_RS08900 WP_003154263.1 1747224..1748003(+) (codY) [Bacillus sp. FSL R5-0447]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment