Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE36_RS08605 Genome accession   NZ_CP152011
Coordinates   1714620..1715399 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. FSL R5-0593     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709620..1720399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE36_RS08585 (NYE36_08585) trmFO 1710307..1711614 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE36_RS08590 (NYE36_08590) xerC 1711684..1712601 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYE36_RS08595 (NYE36_08595) hslV 1712617..1713162 (+) 546 WP_241458200.1 ATP-dependent protease subunit HslV -
  NYE36_RS08600 (NYE36_08600) hslU 1713170..1714582 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  NYE36_RS08605 (NYE36_08605) codY 1714620..1715399 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE36_RS08610 (NYE36_08610) flgB 1715753..1716142 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYE36_RS08615 (NYE36_08615) flgC 1716142..1716594 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NYE36_RS08620 (NYE36_08620) fliE 1716605..1716925 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NYE36_RS08625 (NYE36_08625) fliF 1716968..1718578 (+) 1611 WP_199022520.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE36_RS08630 (NYE36_08630) fliG 1718591..1719607 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYE36_RS08635 (NYE36_08635) fliH 1719600..1720355 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=984747 NYE36_RS08605 WP_003154263.1 1714620..1715399(+) (codY) [Bacillus sp. FSL R5-0593]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=984747 NYE36_RS08605 WP_003154263.1 1714620..1715399(+) (codY) [Bacillus sp. FSL R5-0593]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCTTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment