Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKY80_RS15875 Genome accession   NZ_CP152004
Coordinates   3223999..3226431 (-) Length   810 a.a.
NCBI ID   WP_089986664.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3218999..3231431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS15865 (MKY80_15865) corA 3221009..3221974 (-) 966 WP_089986662.1 magnesium/cobalt transporter CorA -
  MKY80_RS15870 (MKY80_15870) hpaB 3222441..3223874 (-) 1434 WP_089986663.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  MKY80_RS15875 (MKY80_15875) recD2 3223999..3226431 (-) 2433 WP_089986664.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKY80_RS15880 (MKY80_15880) hisA 3226621..3227388 (+) 768 WP_089986665.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MKY80_RS15885 (MKY80_15885) - 3227385..3227672 (+) 288 WP_008181526.1 hypothetical protein -
  MKY80_RS15890 (MKY80_15890) - 3227944..3228675 (+) 732 WP_089986666.1 GTP pyrophosphokinase family protein -
  MKY80_RS15895 (MKY80_15895) - 3228734..3230176 (-) 1443 WP_089986667.1 MDR family MFS transporter -
  MKY80_RS15900 (MKY80_15900) - 3230367..3231026 (-) 660 WP_069482099.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90880.49 Da        Isoelectric Point: 5.0028

>NTDB_id=984462 MKY80_RS15875 WP_089986664.1 3223999..3226431(-) (recD2) [Lysinibacillus sp. FSL R5-0849]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFLRADELGAKLGITGKHPDRVKAAIFHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLQVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVNQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLAEGLQRTDDLQRFTSLRARLNPMDVEEVIVEVEAVLVKQEIVQEAAIEDHKLTVETAPYIHPMIGMD
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=984462 MKY80_RS15875 WP_089986664.1 3223999..3226431(-) (recD2) [Lysinibacillus sp. FSL R5-0849]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATTGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTAAAAATTCAAGAGACAAACTTACAGTATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGTTTTACAGGTATATTAAAACAGCATCCTAAATATGGTGCACAA
TTCCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATCGGGAAAAAAACGGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATATTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATCCATCGCACGATTGAGCAAAATCTTGGTTTA
GAACGGGTAATGATCCAGCTAAATGAATGGGGCTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTACCGAACTGA
AGCCATTGAATTACTAACCGAAAACCCATATCGCTTGATAGAAGATGTGGAAGGGGTAGGGTTCTTACGAGCAGATGAGC
TTGGTGCCAAATTAGGCATTACCGGAAAACATCCTGATCGTGTTAAAGCAGCGATTTTCCATATTTTAAATACGGCTGCA
CTATCTGACGGGCATGTTTATCTAGATGCGGAGCATGTTCTACCACTTGTAAAGGAAATGCTTGAACAAAGCCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATCGAGCTACGAGAAGAAGGCAAAATTTGTGGGGAAGAAACAAGAT
TATATTTACCCTCTCTTTATTTTTCAGAGGTTGGAATTGCCTCCAAAATATTGACGCTTGTTGAACGAAATAGCAAGGCT
GAACATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCAAGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGCCCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCTATTATCCTTTGTGCACCTACTGGTCGAGCTGCTAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACTGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTCACAGGTAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACGTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTTCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCATCCGTCAATCAGGTTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTTGCTAAGGGGCAAGAAATTCGTAATATACAAGTATTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACATATCGAATAAAGGATAAAGTTCTGCAGCTCGTTAATCAACCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATTAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATTGTCTCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTAACCCTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCAAAAATGCTGCGGCGTAATCTTTTATACACAGGGATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCAGATGTCCTGGCAGAGGGCTTGCAGCGCACAGACGATTTACAGCGTTTTAC
TTCGTTGCGCGCTCGATTAAATCCAATGGATGTCGAAGAAGTCATTGTTGAAGTCGAGGCAGTTCTAGTAAAACAAGAGA
TTGTGCAAGAAGCGGCTATCGAGGACCATAAATTAACAGTAGAAACAGCTCCTTATATTCATCCAATGATTGGTATGGAT
GATGTCTCCCCCTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.211

100

0.525

Multiple sequence alignment