Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MKY77_RS17255 Genome accession   NZ_CP152003
Coordinates   3360633..3362978 (-) Length   781 a.a.
NCBI ID   WP_339147017.1    Uniprot ID   -
Organism   Sutcliffiella sp. FSL R7-0096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3355633..3367978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY77_RS17240 (MKY77_17240) dtd 3356726..3357166 (-) 441 WP_339147015.1 D-aminoacyl-tRNA deacylase -
  MKY77_RS17245 (MKY77_17245) - 3357182..3359380 (-) 2199 WP_339147016.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MKY77_RS17250 (MKY77_17250) - 3360106..3360618 (-) 513 WP_060665151.1 adenine phosphoribosyltransferase -
  MKY77_RS17255 (MKY77_17255) recJ 3360633..3362978 (-) 2346 WP_339147017.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MKY77_RS17260 (MKY77_17260) - 3363181..3363504 (-) 324 WP_339147018.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  MKY77_RS17265 (MKY77_17265) - 3363528..3364418 (-) 891 WP_339147019.1 cation diffusion facilitator family transporter -
  MKY77_RS17270 (MKY77_17270) secDF 3364529..3366784 (-) 2256 WP_339147020.1 protein translocase subunit SecDF -
  MKY77_RS17275 (MKY77_17275) - 3366973..3367257 (-) 285 WP_339147021.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88275.88 Da        Isoelectric Point: 5.0707

>NTDB_id=984418 MKY77_RS17255 WP_339147017.1 3360633..3362978(-) (recJ) [Sutcliffiella sp. FSL R7-0096]
MLASKSRWNVKEPKREQVEQLIESMNIAPLIASLLVNRGLDTIDAAKEFLYTDDQDFHDPFLMEDMDKLVQRVNQAMEDS
EKILVFGDYDADGVSSTTVMVTALREIGALVDFYIPNRFTEGYGPNENAFRQAKENGYSVIITVDTGISALHEAKIAKEL
NIDLIITDHHEPGPVLPDAYAIIHPKKETCTYPFDDLAGVGVAYKVAHALLGKNPEHLLEVAAIGTIADLVPLVGENRLL
ASKGIKKMKQTTRVGLKALLQKCGVELHTITEETVGFSIGPRINAVGRLDNADPAVHLLMTDDVEEAKMLAEEMETYNKE
RQQIVTQITEEAIKQVEEKYPPQENSFIIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEEKGLAKGSARSIIGFDLF
ENLSECRDILPHFGGHPMAAGMTLKIADVEELRQRMNQKAAAILTEEDYTPITEVDMECKVEEVTLETIEQLELLSPFGV
NNPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQEGSSLDCVGFGFGEIYHHVSPGASLDVLGELSINEWNNFRKPQIFLK
DIRVTDWQLFDIRSIKQLNQTLAGIDKEKLHILYFNERTLDDVMLQAELRPFATHINGETTPDITGKFVVILDIPAEKSL
LSNLLEKAEPERIYASFYQKENHFFSTIPTREHFKWFYALLSKKGSFDLSKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKAWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=984418 MKY77_RS17255 WP_339147017.1 3360633..3362978(-) (recJ) [Sutcliffiella sp. FSL R7-0096]
TTGTTAGCTTCTAAATCAAGATGGAATGTGAAAGAACCAAAGAGAGAACAAGTCGAACAATTAATTGAATCAATGAATAT
TGCCCCACTTATTGCTTCCCTTTTAGTAAACAGGGGGCTTGACACAATAGACGCAGCAAAGGAATTTTTATATACAGATG
ACCAGGATTTTCACGACCCTTTTCTTATGGAGGATATGGACAAACTTGTTCAACGGGTTAACCAAGCAATGGAAGATAGC
GAAAAGATCCTTGTATTTGGGGACTATGATGCCGATGGAGTCAGCAGCACGACTGTGATGGTTACTGCTCTTCGTGAAAT
CGGGGCGCTCGTTGACTTTTATATTCCAAATCGCTTCACAGAAGGATACGGACCAAACGAAAATGCTTTCCGACAGGCAA
AGGAAAACGGTTATTCCGTCATTATAACGGTTGATACCGGGATATCAGCTCTACATGAAGCAAAGATTGCAAAAGAGCTG
AACATCGACCTTATTATCACTGACCACCATGAACCTGGACCAGTGCTACCTGATGCTTACGCTATCATCCACCCGAAAAA
GGAAACCTGCACCTATCCATTTGATGACCTTGCTGGAGTGGGAGTTGCTTACAAAGTTGCTCATGCGCTTTTAGGGAAAA
ATCCTGAGCACCTATTGGAAGTGGCTGCAATAGGTACTATAGCCGACCTTGTACCATTGGTAGGTGAAAATCGATTACTT
GCATCAAAAGGAATCAAAAAGATGAAGCAGACGACAAGAGTAGGACTAAAAGCACTTCTGCAAAAATGTGGAGTGGAACT
GCATACGATTACAGAGGAGACAGTCGGATTTTCCATCGGCCCAAGAATCAATGCTGTGGGTCGCTTGGACAATGCAGATC
CGGCTGTGCACCTTCTAATGACGGATGATGTAGAAGAAGCAAAAATGCTTGCCGAGGAAATGGAAACGTATAATAAAGAG
CGACAGCAGATTGTCACCCAGATTACAGAAGAAGCAATCAAGCAGGTAGAAGAGAAGTATCCTCCACAAGAAAACAGTTT
TATTATCGTAGAGGGTAATAACTGGAATGCAGGAGTGATCGGTATTGTGGCATCACGCCTTGTCGACCGATTCTACAGAC
CGACCATCGTACTGAGCCTTGACGAGGAAAAAGGGCTGGCGAAGGGGTCGGCACGTTCCATTATAGGGTTTGACCTCTTT
GAAAACCTTTCGGAATGCCGAGATATCCTCCCTCATTTTGGTGGACATCCAATGGCTGCCGGAATGACATTAAAAATAGC
GGATGTAGAAGAGCTTCGTCAAAGAATGAATCAAAAAGCGGCTGCTATCTTAACGGAAGAGGATTATACCCCAATCACCG
AAGTGGATATGGAATGCAAGGTGGAAGAGGTTACACTCGAGACGATTGAGCAATTGGAACTGCTTTCACCATTCGGTGTG
AATAATCCGAAACCTAAAGTTCTCGTCAAAGGTGTGCTTCCACAGCAGATCCGCCAGATTGGCAATAAAAGCAACCACTT
GAAACTTGTCATTGAACAGGAAGGAAGCTCCCTAGATTGTGTGGGGTTCGGTTTCGGCGAAATCTATCATCACGTCTCTC
CAGGAGCATCACTTGATGTGCTTGGGGAATTGTCTATAAATGAATGGAATAACTTTAGAAAGCCTCAGATATTTTTAAAG
GATATCAGGGTGACAGATTGGCAGCTATTTGATATCCGTTCTATTAAACAGCTTAACCAGACATTAGCAGGTATAGATAA
AGAGAAACTTCATATCCTATATTTCAATGAAAGGACGTTGGATGACGTGATGCTCCAAGCGGAACTTCGTCCGTTTGCCA
CCCATATAAATGGAGAAACCACACCGGACATAACCGGGAAGTTCGTAGTCATTTTGGATATCCCGGCTGAGAAATCATTG
CTTTCCAATCTGTTGGAAAAAGCTGAGCCTGAGAGAATCTATGCCTCGTTCTATCAAAAAGAGAATCATTTTTTCTCCAC
CATCCCAACAAGGGAGCACTTCAAATGGTTCTATGCCCTATTATCAAAAAAAGGGTCGTTTGATTTGAGCAAGCATGCTG
AAGATATTGCCAAACATCGTGGATGGTCAAAAGAAACGGTAGATTTTATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAACGGGACTTTGAAGAGTCTCCCACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCATCATATAAACAATTGAAAGCGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(316-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.974

99.872

0.539

Multiple sequence alignment