Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKY11_RS07790 Genome accession   NZ_CP152000
Coordinates   1538119..1538898 (+) Length   259 a.a.
NCBI ID   WP_041507309.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1085     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533119..1543898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY11_RS07770 (MKY11_07770) trmFO 1533823..1535127 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKY11_RS07775 (MKY11_07775) xerC 1535190..1536107 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  MKY11_RS07780 (MKY11_07780) hslV 1536122..1536667 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  MKY11_RS07785 (MKY11_07785) hslU 1536684..1538084 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  MKY11_RS07790 (MKY11_07790) codY 1538119..1538898 (+) 780 WP_041507309.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKY11_RS07795 (MKY11_07795) flgB 1539189..1539578 (+) 390 WP_342501987.1 flagellar basal body rod protein FlgB -
  MKY11_RS07800 (MKY11_07800) flgC 1539578..1540030 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  MKY11_RS07805 (MKY11_07805) fliE 1540042..1540359 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  MKY11_RS07810 (MKY11_07810) fliF 1540410..1542002 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  MKY11_RS07815 (MKY11_07815) fliG 1542014..1543030 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  MKY11_RS07820 (MKY11_07820) fliH 1543023..1543787 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29034.27 Da        Isoelectric Point: 4.6614

>NTDB_id=984290 MKY11_RS07790 WP_041507309.1 1538119..1538898(+) (codY) [Bacillus sp. FSL W7-1085]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=984290 MKY11_RS07790 WP_041507309.1 1538119..1538898(+) (codY) [Bacillus sp. FSL W7-1085]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGTTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAAAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment