Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKY76_RS15955 Genome accession   NZ_CP151995
Coordinates   3169938..3172370 (-) Length   810 a.a.
NCBI ID   WP_315056825.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL P4-0201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3164938..3177370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY76_RS15945 (MKY76_15945) corA 3166947..3167912 (-) 966 WP_315056830.1 magnesium/cobalt transporter CorA -
  MKY76_RS15950 (MKY76_15950) hpaB 3168381..3169814 (-) 1434 WP_066036481.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  MKY76_RS15955 (MKY76_15955) recD2 3169938..3172370 (-) 2433 WP_315056825.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKY76_RS15960 (MKY76_15960) hisA 3172560..3173327 (+) 768 WP_048392137.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MKY76_RS15965 (MKY76_15965) - 3173324..3173611 (+) 288 WP_048392136.1 hypothetical protein -
  MKY76_RS15970 (MKY76_15970) - 3174157..3174906 (+) 750 WP_048392669.1 GTP pyrophosphokinase family protein -
  MKY76_RS15975 (MKY76_15975) - 3174996..3176441 (-) 1446 WP_066036483.1 MDR family MFS transporter -
  MKY76_RS15980 (MKY76_15980) - 3176614..3177273 (-) 660 WP_315056815.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90690.99 Da        Isoelectric Point: 4.7772

>NTDB_id=984056 MKY76_RS15955 WP_315056825.1 3169938..3172370(-) (recD2) [Lysinibacillus sp. FSL P4-0201]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEQVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGTAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVDNEGMQEPVSVEQKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=984056 MKY76_RS15955 WP_315056825.1 3169938..3172370(-) (recD2) [Lysinibacillus sp. FSL P4-0201]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAGATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCTAATGCACTCCGTGTTATTTTAGAAGATCCTA
GTGCCCTCGATGCTGTTCCGCGTCTATCCGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAGATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTGATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCCGACGAGC
TAGGTGCGAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTTTATCTAGATGCAGAACAGGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATTTCTCAAGCCTGTATCGGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATCTGCCATCACTCTATTTTTCGGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTTTATGCAAAGCTTCATGGGCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
CCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGGGAAGTAACAGGTAAGCTAATTATCGTGG
ATGAAATGTCAATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTATCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCGCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCAGACCAAGTTGCCAACGTTGTAACTCAA
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTGTTGGCGCCCATGTACAAAGGAACAGCTGG
TATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTCTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGATCGAAAAACAAGATTTACTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTGCTTGCGGATGGTTTACAACGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGATAATGAAG
GGATGCAGGAGCCTGTTTCCGTTGAACAAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.328

100

0.527

Multiple sequence alignment