Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ70_RS07890 Genome accession   NZ_CP151992
Coordinates   1561674..1562453 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL R5-0397     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556674..1567453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS07870 (NSQ70_07870) trmFO 1557378..1558682 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ70_RS07875 (NSQ70_07875) xerC 1558745..1559662 (+) 918 WP_342502538.1 tyrosine recombinase XerC -
  NSQ70_RS07880 (NSQ70_07880) hslV 1559677..1560222 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NSQ70_RS07885 (NSQ70_07885) hslU 1560239..1561639 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NSQ70_RS07890 (NSQ70_07890) codY 1561674..1562453 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ70_RS07895 (NSQ70_07895) flgB 1562744..1563133 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NSQ70_RS07900 (NSQ70_07900) flgC 1563133..1563585 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NSQ70_RS07905 (NSQ70_07905) fliE 1563597..1563914 (+) 318 WP_342502539.1 flagellar hook-basal body complex protein FliE -
  NSQ70_RS07910 (NSQ70_07910) fliF 1563965..1565557 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ70_RS07915 (NSQ70_07915) fliG 1565569..1566585 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  NSQ70_RS07920 (NSQ70_07920) fliH 1566578..1567342 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983920 NSQ70_RS07890 WP_007499612.1 1561674..1562453(+) (codY) [Bacillus sp. FSL R5-0397]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983920 NSQ70_RS07890 WP_007499612.1 1561674..1562453(+) (codY) [Bacillus sp. FSL R5-0397]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTTTTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment