Detailed information NTG0983871

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LU_RS08770
• Genome accession: NZ_CP184019
• Coordinates: 1839810..1840802 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1434
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1834810..1845802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LU_RS08740 (ACN9LU_08740)	ispD	1834871..1835581 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACN9LU_RS08745 (ACN9LU_08745)	ispF	1835581..1836060 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LU_RS08750 (ACN9LU_08750)	truD	1836057..1837106 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LU_RS08755 (ACN9LU_08755)	surE	1837087..1837848 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LU_RS08760 (ACN9LU_08760)	pcm	1837842..1838468 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LU_RS08765 (ACN9LU_08765)	nlpD	1838653..1839747 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LU_RS08770 (ACN9LU_08770)	rpoS	1839810..1840802 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LU_RS08775 (ACN9LU_08775)	-	1840973..1841524 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LU_RS08780 (ACN9LU_08780)	-	1841749..1842792 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LU_RS08785 (ACN9LU_08785)	ygbN	1842935..1844299 (-)	1365	WP_000104433.1	GntP family transporter	-
ACN9LU_RS08790 (ACN9LU_08790)	ygbM	1844388..1845164 (-)	777	WP_420026799.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=983871 ACN9LU_RS08770 WP_000081550.1 1839810..1840802(+) (rpoS) [Escherichia coli strain 1434]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=983871 ACN9LU_RS08770 WP_000081550.1 1839810..1840802(+) (rpoS) [Escherichia coli strain 1434]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715