Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NST15_RS07880 Genome accession   NZ_CP151991
Coordinates   1544993..1545772 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL R5-0820     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539993..1550772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST15_RS07860 (NST15_07860) trmFO 1540697..1542001 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST15_RS07865 (NST15_07865) xerC 1542064..1542981 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NST15_RS07870 (NST15_07870) hslV 1542996..1543541 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NST15_RS07875 (NST15_07875) hslU 1543558..1544958 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  NST15_RS07880 (NST15_07880) codY 1544993..1545772 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NST15_RS07885 (NST15_07885) flgB 1546061..1546449 (+) 389 Protein_1502 flagellar basal body rod protein FlgB -
  NST15_RS07890 (NST15_07890) flgC 1546449..1546901 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NST15_RS07895 (NST15_07895) fliE 1546913..1547230 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NST15_RS07900 (NST15_07900) fliF 1547281..1548873 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  NST15_RS07905 (NST15_07905) fliG 1548885..1549901 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  NST15_RS07910 (NST15_07910) fliH 1549894..1550658 (+) 765 WP_008344806.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983858 NST15_RS07880 WP_007499612.1 1544993..1545772(+) (codY) [Bacillus sp. FSL R5-0820]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983858 NST15_RS07880 WP_007499612.1 1544993..1545772(+) (codY) [Bacillus sp. FSL R5-0820]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATTCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment