Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ30_RS08350 Genome accession   NZ_CP151990
Coordinates   1660352..1661131 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0651     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655352..1666131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS08330 (NSQ30_08330) trmFO 1656056..1657360 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ30_RS08335 (NSQ30_08335) xerC 1657423..1658340 (+) 918 WP_106067464.1 tyrosine recombinase XerC -
  NSQ30_RS08340 (NSQ30_08340) hslV 1658355..1658900 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  NSQ30_RS08345 (NSQ30_08345) hslU 1658917..1660317 (+) 1401 WP_106067465.1 HslU--HslV peptidase ATPase subunit -
  NSQ30_RS08350 (NSQ30_08350) codY 1660352..1661131 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ30_RS08355 (NSQ30_08355) flgB 1661418..1661807 (+) 390 WP_342488499.1 flagellar basal body rod protein FlgB -
  NSQ30_RS08360 (NSQ30_08360) flgC 1661807..1662259 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  NSQ30_RS08365 (NSQ30_08365) fliE 1662271..1662588 (+) 318 WP_065097275.1 flagellar hook-basal body complex protein FliE -
  NSQ30_RS08370 (NSQ30_08370) fliF 1662638..1664230 (+) 1593 WP_065097276.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ30_RS08375 (NSQ30_08375) fliG 1664242..1665258 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  NSQ30_RS08380 (NSQ30_08380) fliH 1665251..1666015 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=983796 NSQ30_RS08350 WP_003210838.1 1660352..1661131(+) (codY) [Bacillus sp. FSL R7-0651]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983796 NSQ30_RS08350 WP_003210838.1 1660352..1661131(+) (codY) [Bacillus sp. FSL R7-0651]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAGGAAAT
GGCAGAAACTTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment