Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NST09_RS07975 Genome accession   NZ_CP151988
Coordinates   1568055..1568834 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL W7-1346     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563055..1573834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS07955 (NST09_07955) trmFO 1563759..1565063 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST09_RS07960 (NST09_07960) xerC 1565126..1566043 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NST09_RS07965 (NST09_07965) hslV 1566058..1566603 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NST09_RS07970 (NST09_07970) hslU 1566620..1568020 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NST09_RS07975 (NST09_07975) codY 1568055..1568834 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NST09_RS07980 (NST09_07980) flgB 1569123..1569512 (+) 390 WP_186365886.1 flagellar basal body rod protein FlgB -
  NST09_RS07985 (NST09_07985) flgC 1569512..1569964 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NST09_RS07990 (NST09_07990) fliE 1569976..1570293 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NST09_RS07995 (NST09_07995) fliF 1570344..1571936 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  NST09_RS08000 (NST09_08000) fliG 1571948..1572964 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  NST09_RS08005 (NST09_08005) fliH 1572957..1573721 (+) 765 WP_072367267.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983674 NST09_RS07975 WP_007499612.1 1568055..1568834(+) (codY) [Bacillus sp. FSL W7-1346]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983674 NST09_RS07975 WP_007499612.1 1568055..1568834(+) (codY) [Bacillus sp. FSL W7-1346]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGGGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment