Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ11_RS08125 Genome accession   NZ_CP151987
Coordinates   1588241..1589020 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL W7-1582     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583241..1594020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ11_RS08105 (NSQ11_08105) trmFO 1583945..1585249 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ11_RS08110 (NSQ11_08110) xerC 1585312..1586229 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NSQ11_RS08115 (NSQ11_08115) hslV 1586244..1586789 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NSQ11_RS08120 (NSQ11_08120) hslU 1586806..1588206 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NSQ11_RS08125 (NSQ11_08125) codY 1588241..1589020 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ11_RS08130 (NSQ11_08130) flgB 1589309..1589698 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  NSQ11_RS08135 (NSQ11_08135) flgC 1589698..1590150 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  NSQ11_RS08140 (NSQ11_08140) fliE 1590162..1590479 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NSQ11_RS08145 (NSQ11_08145) fliF 1590530..1592122 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ11_RS08150 (NSQ11_08150) fliG 1592134..1593150 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  NSQ11_RS08155 (NSQ11_08155) fliH 1593143..1593907 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983613 NSQ11_RS08125 WP_007499612.1 1588241..1589020(+) (codY) [Bacillus sp. FSL W7-1582]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983613 NSQ11_RS08125 WP_007499612.1 1588241..1589020(+) (codY) [Bacillus sp. FSL W7-1582]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAATAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAGAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment