Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSS80_RS08060 Genome accession   NZ_CP151985
Coordinates   1581546..1582325 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL M8-0350     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576546..1587325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS08040 (NSS80_08040) trmFO 1577250..1578554 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS80_RS08045 (NSS80_08045) xerC 1578617..1579534 (+) 918 WP_034281771.1 tyrosine recombinase XerC -
  NSS80_RS08050 (NSS80_08050) hslV 1579549..1580094 (+) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  NSS80_RS08055 (NSS80_08055) hslU 1580111..1581511 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  NSS80_RS08060 (NSS80_08060) codY 1581546..1582325 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSS80_RS08065 (NSS80_08065) flgB 1582614..1583003 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  NSS80_RS08070 (NSS80_08070) flgC 1583003..1583455 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  NSS80_RS08075 (NSS80_08075) fliE 1583521..1583784 (+) 264 WP_231122764.1 flagellar hook-basal body complex protein FliE -
  NSS80_RS08080 (NSS80_08080) fliF 1583834..1585426 (+) 1593 WP_342498452.1 flagellar basal-body MS-ring/collar protein FliF -
  NSS80_RS08085 (NSS80_08085) fliG 1585438..1586454 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  NSS80_RS08090 (NSS80_08090) fliH 1586447..1587211 (+) 765 WP_034281779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983490 NSS80_RS08060 WP_007499612.1 1581546..1582325(+) (codY) [Bacillus sp. FSL M8-0350]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983490 NSS80_RS08060 WP_007499612.1 1581546..1582325(+) (codY) [Bacillus sp. FSL M8-0350]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ATCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCTATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment